SCOPe 2.07: Protein: R1 subunit of ribonucleotide reductase, C-terminal domain

Lineage for Protein: R1 subunit of ribonucleotide reductase, C-terminal domain

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.7: PFL-like glycyl radical enzymes [51997] (1 superfamily)
contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel
Superfamily c.7.1: PFL-like glycyl radical enzymes [51998] (6 families)
duplication: the N- and C-terminal halves have similar topologies
Family c.7.1.2: R1 subunit of ribonucleotide reductase, C-terminal domain [52002] (1 protein)
automatically mapped to Pfam PF02867
Protein R1 subunit of ribonucleotide reductase, C-terminal domain [52003] (2 species)

Species:

Escherichia coli [TaxId:562] [52004] (10 PDB entries)
1. Domains for 1r1r:
  1. Domain d1r1ra2: 1r1r A:222-737 [30680]
    Other proteins in same PDB: d1r1ra1, d1r1rb1, d1r1rc1
    mutant
  2. Domain d1r1rb2: 1r1r B:222-737 [30681]
    Other proteins in same PDB: d1r1ra1, d1r1rb1, d1r1rc1
    mutant
  3. Domain d1r1rc2: 1r1r C:222-737 [30682]
    Other proteins in same PDB: d1r1ra1, d1r1rb1, d1r1rc1
    mutant
2. Domain for 1rlr:
  - Domain d1rlra2: 1rlr A:222-748 [30679]
    Other proteins in same PDB: d1rlra1
3. Domains for 2r1r:
  1. Domain d2r1ra2: 2r1r A:222-737 [30695]
    Other proteins in same PDB: d2r1ra1, d2r1rb1, d2r1rc1
    complexed with ttp
  2. Domain d2r1rb2: 2r1r B:222-737 [30696]
    Other proteins in same PDB: d2r1ra1, d2r1rb1, d2r1rc1
    complexed with ttp
  3. Domain d2r1rc2: 2r1r C:222-737 [30697]
    Other proteins in same PDB: d2r1ra1, d2r1rb1, d2r1rc1
    complexed with ttp
4. Domains for 2x1y:
  1. Domain d2x1ya2: 2x1y A:222-737 [304624]
    Other proteins in same PDB: d2x1ya1, d2x1yb1, d2x1yc1
    automated match to d2r1ra2
  2. Domain d2x1yb2: 2x1y B:222-737 [304626]
    Other proteins in same PDB: d2x1ya1, d2x1yb1, d2x1yc1
    automated match to d2r1ra2
  3. Domain d2x1yc2: 2x1y C:222-737 [304628]
    Other proteins in same PDB: d2x1ya1, d2x1yb1, d2x1yc1
    automated match to d2r1ra2
5. Domains for 3r1r:
  1. Domain d3r1ra2: 3r1r A:222-737 [30692]
    Other proteins in same PDB: d3r1ra1, d3r1rb1, d3r1rc1
    complexed with atp
  2. Domain d3r1rb2: 3r1r B:222-737 [30693]
    Other proteins in same PDB: d3r1ra1, d3r1rb1, d3r1rc1
    complexed with atp
  3. Domain d3r1rc2: 3r1r C:222-737 [30694]
    Other proteins in same PDB: d3r1ra1, d3r1rb1, d3r1rc1
    complexed with atp
6. Domains for 4r1r:
  1. Domain d4r1ra2: 4r1r A:222-737 [30698]
    Other proteins in same PDB: d4r1ra1, d4r1rb1, d4r1rc1
    complexed with gdp, ttp
  2. Domain d4r1rb2: 4r1r B:222-737 [30699]
    Other proteins in same PDB: d4r1ra1, d4r1rb1, d4r1rc1
    complexed with gdp, ttp
  3. Domain d4r1rc2: 4r1r C:222-737 [30700]
    Other proteins in same PDB: d4r1ra1, d4r1rb1, d4r1rc1
    complexed with gdp, ttp
7. Domains for 5cns:
  1. Domain d5cnsa2: 5cns A:222-736 [312801]
    Other proteins in same PDB: d5cnsa1, d5cnsb1, d5cnsc1, d5cnsd1
    automated match to d2r1ra2
    complexed with cdp, dat, dtp, feo, mg
  2. Domain d5cnsb2: 5cns B:222-737 [312853]
    Other proteins in same PDB: d5cnsa1, d5cnsb1, d5cnsc1, d5cnsd1
    automated match to d2r1ra2
    complexed with cdp, dat, dtp, feo, mg
  3. Domain d5cnsc2: 5cns C:222-736 [312821]
    Other proteins in same PDB: d5cnsa1, d5cnsb1, d5cnsc1, d5cnsd1
    automated match to d2r1ra2
    complexed with cdp, dat, dtp, feo, mg
  4. Domain d5cnsd2: 5cns D:222-737 [312856]
    Other proteins in same PDB: d5cnsa1, d5cnsb1, d5cnsc1, d5cnsd1
    automated match to d2r1ra2
    complexed with cdp, dat, dtp, feo, mg
8. Domains for 5r1r:
  1. Domain d5r1ra2: 5r1r A:222-738 [30683]
    Other proteins in same PDB: d5r1ra1, d5r1rb1, d5r1rc1
    mutant
  2. Domain d5r1rb2: 5r1r B:222-738 [30684]
    Other proteins in same PDB: d5r1ra1, d5r1rb1, d5r1rc1
    mutant
  3. Domain d5r1rc2: 5r1r C:222-738 [30685]
    Other proteins in same PDB: d5r1ra1, d5r1rb1, d5r1rc1
    mutant
9. Domains for 6r1r:
  1. Domain d6r1ra2: 6r1r A:222-738 [30686]
    Other proteins in same PDB: d6r1ra1, d6r1rb1, d6r1rc1
    mutant
  2. Domain d6r1rb2: 6r1r B:222-738 [30687]
    Other proteins in same PDB: d6r1ra1, d6r1rb1, d6r1rc1
    mutant
  3. Domain d6r1rc2: 6r1r C:222-738 [30688]
    Other proteins in same PDB: d6r1ra1, d6r1rb1, d6r1rc1
    mutant
10. Domains for 7r1r:
  1. Domain d7r1ra2: 7r1r A:222-738 [30689]
    Other proteins in same PDB: d7r1ra1, d7r1rb1, d7r1rc1
    mutant
  2. Domain d7r1rb2: 7r1r B:222-738 [30690]
    Other proteins in same PDB: d7r1ra1, d7r1rb1, d7r1rc1
    mutant
  3. Domain d7r1rc2: 7r1r C:222-738 [30691]
    Other proteins in same PDB: d7r1ra1, d7r1rb1, d7r1rc1
    mutant
Salmonella typhimurium [TaxId:90371] [110447] (5 PDB entries)
Uniprot Q08698
1. Domain for 1pem:
  - Domain d1pema2: 1pem A:175-699 [104128]
    Other proteins in same PDB: d1pema1
2. Domain for 1peo:
  - Domain d1peoa2: 1peo A:175-699 [104130]
    Other proteins in same PDB: d1peoa1
    complexed with dcp, mg
3. Domain for 1peq:
  - Domain d1peqa2: 1peq A:175-699 [104132]
    Other proteins in same PDB: d1peqa1
    complexed with mg, ttp
4. Domain for 1peu:
  - Domain d1peua2: 1peu A:175-699 [104134]
    Other proteins in same PDB: d1peua1
    complexed with dtp, mg
5. Domains for 2bq1:
  1. Domain d2bq1e2: 2bq1 E:175-699 [128954]
    Other proteins in same PDB: d2bq1e1, d2bq1f1, d2bq1i1, d2bq1j1
    automatically matched to d1pema2
    protein/DNA complex; complexed with dgt, fe, mg
  2. Domain d2bq1f2: 2bq1 F:175-699 [128956]
    Other proteins in same PDB: d2bq1e1, d2bq1f1, d2bq1i1, d2bq1j1
    automatically matched to d1pema2
    protein/DNA complex; complexed with dgt, fe, mg

More info for Protein R1 subunit of ribonucleotide reductase, C-terminal domain from c.7.1.2: R1 subunit of ribonucleotide reductase, C-terminal domain

Timeline for Protein R1 subunit of ribonucleotide reductase, C-terminal domain from c.7.1.2: R1 subunit of ribonucleotide reductase, C-terminal domain:

Protein R1 subunit of ribonucleotide reductase, C-terminal domain from c.7.1.2: R1 subunit of ribonucleotide reductase, C-terminal domain first appeared (with stable ids) in SCOP 1.55
Protein R1 subunit of ribonucleotide reductase, C-terminal domain from c.7.1.2: R1 subunit of ribonucleotide reductase, C-terminal domain appears in SCOPe 2.06
Protein R1 subunit of ribonucleotide reductase, C-terminal domain from c.7.1.2: R1 subunit of ribonucleotide reductase, C-terminal domain appears in the current release, SCOPe 2.08