Lineage for Family b.47.1.3: Viral proteases

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2794584Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 2794585Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 2797067Family b.47.1.3: Viral proteases [50596] (5 proteins)
    beta sheet in the first domain is opened rather than forms a barrel

Proteins:

  1. 2797068NS3 protease [50600] (5 species)
    1. 2797069Species Dengue virus 3 [TaxId:408693] [189803] (2 PDB entries)
    2. 2797073Species Dengue virus type 2 [TaxId:11060] [50602] (1 PDB entry)
    3. 2797075Species Hepatitis C virus subtype 1a [TaxId:31646] [254867] (2 PDB entries)
    4. 2797078Species Human hepatitis C virus (HCV), different isolates [TaxId:11103] [50601] (14 PDB entries)
      Uniprot P27958 1027-1206,1678-1669
      Uniprot P26662 1029-1202,1677-1689
      Uniprot O36579 1054-1207
    5. 2797106Species West Nile virus [TaxId:11082] [141386] (2 PDB entries)
      Uniprot P06935 1520-1671
  2. 2797109NSP4 proteinase [82128] (1 species)
    minimal fold; contains C-terminal extension
  3. 2797115TEV protease (nucleat inclusion protein A, NIA) [82126] (1 species)
  4. 2797123Viral capsid protein [50597] (3 species)
    1. 2797124Species Semliki forest virus [TaxId:11033] [50599] (2 PDB entries)
    2. 2797130Species Sindbis virus [TaxId:11034] [50598] (11 PDB entries)
    3. 2797150Species Venezuelan equine encephalitis virus [TaxId:11036] [89347] (2 PDB entries)
  5. 2797157automated matches [190658] (12 species)
    not a true protein
    1. 2797158Species Aura virus [TaxId:44158] [194195] (5 PDB entries)
    2. 2797166Species Chikungunya virus [TaxId:37124] [346472] (1 PDB entry)
    3. 2797169Species Hepacivirus c [TaxId:11103] [355696] (21 PDB entries)
    4. 2797191Species Hepatitis c virus genotype 1a (isolate 1) [TaxId:11104] [387152] (7 PDB entries)
    5. 2797199Species Hepatitis c virus genotype 3a (isolate nzl1) [TaxId:356415] [387173] (1 PDB entry)
    6. 2797201Species Hepatitis c virus genotype 4a (isolate ed43) [TaxId:356418] [387155] (2 PDB entries)
    7. 2797204Species Hepatitis c virus genotype 5a (isolate sa13) [TaxId:356390] [387159] (1 PDB entry)
    8. 2797206Species Hepatitis C virus subtype 1a [TaxId:31646] [226463] (22 PDB entries)
    9. 2797240Species Hepatitis C virus [TaxId:11103] [189262] (15 PDB entries)
    10. 2797267Species West Nile virus [TaxId:11082] [187751] (2 PDB entries)
    11. 2797271Species Zika virus (strain mr 766) [TaxId:64320] [324405] (8 PDB entries)
    12. 2797286Species Zika virus [TaxId:64320] [327129] (7 PDB entries)

More info for Family b.47.1.3: Viral proteases

Timeline for Family b.47.1.3: Viral proteases: