SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Zika virus [TaxId: 64320]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2055629Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 2055630Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 2057706Family b.47.1.3: Viral proteases [50596] (5 protein domains)
    beta sheet in the first domain is opened rather than forms a barrel
  6. 2057796Protein automated matches [190658] (6 species)
    not a true protein
  7. 2283828Species Zika virus [TaxId:64320] [327129] (2 PDB entries)

PDB entries in Species: Zika virus [TaxId: 64320]:

  1. Domain(s) for 5gpi:
    1. 2283829Domain d5gpif_: 5gpi F: [327130]
      Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_
      automated match to d3e90b_
    2. 2283830Domain d5gpid_: 5gpi D: [327131]
      Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_
      automated match to d3e90b_
    3. 2283849Domain d5gpih_: 5gpi H: [327150]
      Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_
      automated match to d3e90b_
    4. 2283869Domain d5gpib_: 5gpi B: [327170]
      Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_
      automated match to d3e90b_
  2. Domain(s) for 5h4i:

More info for Species Zika virus [TaxId:64320] from b.47.1.3 automated matches

Timeline for Species Zika virus [TaxId:64320] from b.47.1.3 automated matches:

  • Species Zika virus [TaxId:64320] from b.47.1.3 automated matches appears in periodic updates to SCOPe 2.06 starting on 2016-12-15