Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2055629Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 2055630Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 2057706Family b.47.1.3: Viral proteases [50596] (5 protein domains)
    beta sheet in the first domain is opened rather than forms a barrel
  6. 2057796Protein automated matches [190658] (6 species)
    not a true protein

Species:

  1. 2057797Aura virus [TaxId:44158] [194195] (5 PDB entries)
    1. Domain for 4agj:
    2. Domain for 4agk:
    3. Domains for 4aus:
      1. 2057801Domain d4ausa1: 4aus A:110-261 [307031]
        Other proteins in same PDB: d4ausa2
        automated match to d1kxfa_
        complexed with gol
      2. 2057802Domain d4ausb_: 4aus B: [307033]
        Other proteins in same PDB: d4ausa2
        automated match to d1kxfa_
        complexed with gol
    4. Domains for 4uon:
      1. 2057799Domain d4uona1: 4uon A:110-261 [257700]
        Other proteins in same PDB: d4uona2
        automated match to d1kxfa_
        complexed with gol
      2. 2057800Domain d4uonb_: 4uon B: [260594]
        Other proteins in same PDB: d4uona2
        automated match to d1kxfa_
        complexed with gol
    5. Domain for 5g4b:
  2. 2057804Hepatitis C virus subtype 1a [TaxId:31646] [226463] (21 PDB entries)
    1. Domain for 3su0:
    2. Domain for 3su1:
    3. Domain for 3su2:
    4. Domain for 3su3:
    5. Domains for 3su4:
      1. 2057820Domain d3su4a_: 3su4 A: [233634]
        automated match to d3sv8a_
        complexed with so4, su3, zn
      2. 2057821Domain d3su4b_: 3su4 B: [233635]
        automated match to d3sv8a_
        complexed with so4, su3, zn
    6. Domain for 3su5:
    7. Domain for 3su6:
    8. Domains for 3sud:
      1. 2057816Domain d3suda_: 3sud A: [265371]
        automated match to d3sv6a_
        complexed with so4, sue, zn
      2. 2057817Domain d3sudb_: 3sud B: [265372]
        automated match to d3sv6a_
        complexed with so4, sue, zn
      3. 2057818Domain d3sudc_: 3sud C: [265373]
        automated match to d3sv6a_
        complexed with so4, sue, zn
      4. 2057819Domain d3sudd_: 3sud D: [265374]
        automated match to d3sv6a_
        complexed with so4, sue, zn
    9. Domains for 3sue:
      1. 2057822Domain d3suea_: 3sue A: [233636]
        automated match to d3sv8a_
        complexed with sue, zn
      2. 2057823Domain d3sueb_: 3sue B: [239775]
        automated match to d3suea_
        complexed with sue, zn
      3. 2057824Domain d3suec_: 3sue C: [239776]
        automated match to d3suea_
        complexed with sue, zn
      4. 2057825Domain d3sued_: 3sue D: [239777]
        automated match to d3suea_
        complexed with sue, zn
    10. Domains for 3suf:
      1. 2057826Domain d3sufa_: 3suf A: [233637]
        automated match to d3sv8a_
        complexed with so4, sue, zn
      2. 2057827Domain d3sufb_: 3suf B: [239778]
        automated match to d3sufa_
        complexed with so4, sue, zn
      3. 2057828Domain d3sufc_: 3suf C: [239779]
        automated match to d3sufa_
        complexed with so4, sue, zn
      4. 2057829Domain d3sufd_: 3suf D: [239780]
        automated match to d3sufa_
        complexed with so4, sue, zn
    11. Domain for 3sug:
    12. Domain for 3sv6:
    13. Domain for 3sv7:
    14. Domain for 3sv8:
    15. Domain for 3sv9:
    16. Domain for 4nwk:
    17. Domains for 4nwl:
      1. 2057832Domain d4nwla1: 4nwl A:-10-182 [254029]
        Other proteins in same PDB: d4nwla2, d4nwlb2
        automated match to d4nwka_
        complexed with 2r9, zn
      2. 2057833Domain d4nwlb1: 4nwl B:-10-182 [254030]
        Other proteins in same PDB: d4nwla2, d4nwlb2
        automated match to d4nwka_
        complexed with 2r9, zn
    18. Domain for 4wh6:
    19. Domains for 4wh8:
      1. 2057834Domain d4wh8a1: 4wh8 A:1004-1179 [260466]
        Other proteins in same PDB: d4wh8a2, d4wh8b2
        automated match to d3m5la_
        complexed with 3m7, so4, zn
      2. 2057835Domain d4wh8b1: 4wh8 B:1004-1179 [261475]
        Other proteins in same PDB: d4wh8a2, d4wh8b2
        automated match to d3m5la_
        complexed with 3m7, so4, zn
    20. Domain for 5voj:
    21. Domain for 5vp9:
  3. 2057836Hepatitis C virus [TaxId:11103] [189262] (11 PDB entries)
    1. Domain for 2k1q:
    2. Domains for 3kee:
      1. 2057839Domain d3keea_: 3kee A: [179300]
        automated match to d1a1qa_
        complexed with 30b, gol, zn
      2. 2057840Domain d3keeb_: 3kee B: [179301]
        automated match to d1a1qa_
        complexed with 30b, gol, zn
      3. 2057841Domain d3keec_: 3kee C: [179302]
        automated match to d1a1qa_
        complexed with 30b, gol, zn
      4. 2057842Domain d3keed_: 3kee D: [179303]
        automated match to d1a1qa_
        complexed with 30b, gol, zn
    3. Domains for 4k8b:
      1. 2057849Domain d4k8ba_: 4k8b A: [237959]
        automated match to d1a1qa_
        complexed with 1rr, so4, zn
      2. 2057850Domain d4k8bb_: 4k8b B: [237960]
        automated match to d1a1qa_
        complexed with 1rr, so4, zn
    4. Domain for 4wf8:
    5. Domain for 5epn:
    6. Domain for 5epy:
    7. Domain for 5eqq:
    8. Domain for 5eqr:
    9. Domain for 5eqs:
    10. Domain for 5esb:
    11. Domains for 5etx:
      1. 2057845Domain d5etxa1: 5etx A:1005-1180 [280361]
        Other proteins in same PDB: d5etxa2, d5etxb2, d5etxc2, d5etxd2
        automated match to d3sv9a_
        complexed with 5rs, cl, zn
      2. 2057846Domain d5etxb1: 5etx B:1004-1180 [280360]
        Other proteins in same PDB: d5etxa2, d5etxb2, d5etxc2, d5etxd2
        automated match to d3sv9a_
        complexed with 5rs, cl, zn
      3. 2057847Domain d5etxc1: 5etx C:1004-1179 [280362]
        Other proteins in same PDB: d5etxa2, d5etxb2, d5etxc2, d5etxd2
        automated match to d3sv9a_
        complexed with 5rs, cl, zn
      4. 2057848Domain d5etxd1: 5etx D:1006-1180 [280363]
        Other proteins in same PDB: d5etxa2, d5etxb2, d5etxc2, d5etxd2
        automated match to d3sv9a_
        complexed with 5rs, cl, zn
  4. 2057852West Nile virus [TaxId:11082] [187751] (2 PDB entries)
    1. Domain for 2ggv:
    2. Domains for 3e90:
      1. 2057854Domain d3e90b_: 3e90 B: [174762]
        Other proteins in same PDB: d3e90a_, d3e90c_
        automated match to d2ijob1
        protein/RNA complex; complexed with nkk
      2. 2057855Domain d3e90d_: 3e90 D: [174763]
        Other proteins in same PDB: d3e90a_, d3e90c_
        automated match to d2ijob1
        protein/RNA complex; complexed with nkk
  5. 2281104Zika virus (strain mr 766) [TaxId:64320] [324405] (2 PDB entries)
    1. Domains for 5gj4:
      1. 2281105Domain d5gj4b_: 5gj4 B: [324406]
        Other proteins in same PDB: d5gj4a1, d5gj4c1, d5gj4e1, d5gj4g1
        automated match to d3e90d_
        complexed with cl
      2. 2281110Domain d5gj4d_: 5gj4 D: [324411]
        Other proteins in same PDB: d5gj4a1, d5gj4c1, d5gj4e1, d5gj4g1
        automated match to d3e90d_
        complexed with cl
      3. 2281127Domain d5gj4f_: 5gj4 F: [324428]
        Other proteins in same PDB: d5gj4a1, d5gj4c1, d5gj4e1, d5gj4g1
        automated match to d3e90d_
        complexed with cl
      4. 2281173Domain d5gj4h_: 5gj4 H: [324474]
        Other proteins in same PDB: d5gj4a1, d5gj4c1, d5gj4e1, d5gj4g1
        automated match to d3e90d_
        complexed with cl
    2. Domain for 5h6v:
  6. 2283828Zika virus [TaxId:64320] [327129] (2 PDB entries)
    1. Domains for 5gpi:
      1. 2283829Domain d5gpif_: 5gpi F: [327130]
        Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_
        automated match to d3e90b_
      2. 2283830Domain d5gpid_: 5gpi D: [327131]
        Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_
        automated match to d3e90b_
      3. 2283849Domain d5gpih_: 5gpi H: [327150]
        Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_
        automated match to d3e90b_
      4. 2283869Domain d5gpib_: 5gpi B: [327170]
        Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_
        automated match to d3e90b_
    2. Domain for 5h4i:

More info for Protein automated matches from b.47.1.3: Viral proteases

Timeline for Protein automated matches from b.47.1.3: Viral proteases: