SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Pseudomonas putida [TaxId: 390235]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2188697Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 2188938Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (8 families) (S)
    alpha-beta(2)-alpha(2)-beta(3)
  5. 2189175Family d.110.3.0: automated matches [191387] (1 protein)
    not a true family
  6. 2189176Protein automated matches [190492] (19 species)
    not a true protein
  7. 2286763Species Pseudomonas putida [TaxId:390235] [330064] (1 PDB entry)

PDB entry in Species: Pseudomonas putida [TaxId: 390235]:

More info for Species Pseudomonas putida [TaxId:390235] from d.110.3.0 automated matches

Timeline for Species Pseudomonas putida [TaxId:390235] from d.110.3.0 automated matches:

  • Species Pseudomonas putida [TaxId:390235] from d.110.3.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-02-23