Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2534513Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 2534777Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (8 families) (S)
    alpha-beta(2)-alpha(2)-beta(3)
  5. 2535027Family d.110.3.0: automated matches [191387] (1 protein)
    not a true family
  6. 2535028Protein automated matches [190492] (20 species)
    not a true protein

Species:

  1. 2535029Azotobacter vinelandii [TaxId:354] [187754] (1 PDB entry)
  2. 2535032Bacillus subtilis [TaxId:1423] [225313] (2 PDB entries)
    1. Domains for 2pr5:
      1. 2535033Domain d2pr5a_: 2pr5 A: [205596]
        automated match to d4hoia_
        complexed with acy, fmn, na
      2. 2535034Domain d2pr5b_: 2pr5 B: [205597]
        automated match to d4hoia_
        complexed with acy, fmn, na
    2. Domains for 2pr6:
      1. 2535035Domain d2pr6a_: 2pr6 A: [205598]
        automated match to d4hoia_
        complexed with fmn
      2. 2535036Domain d2pr6b_: 2pr6 B: [205599]
        automated match to d4hoia_
        complexed with fmn
  3. 2535037Brucella melitensis [TaxId:29459] [226408] (1 PDB entry)
  4. 2535040Deinococcus radiodurans [TaxId:1299] [226273] (5 PDB entries)
    1. Domain for 3s7n:
    2. Domain for 3s7o:
    3. Domain for 3s7p:
    4. Domain for 3s7q:
    5. Domain for 4cqh:
  5. 2535046Deinococcus radiodurans [TaxId:243230] [230052] (1 PDB entry)
  6. 2535048Dinoroseobacter shibae [TaxId:398580] [261211] (6 PDB entries)
    1. Domain for 4kuk:
    2. Domain for 4kuo:
    3. Domains for 6gay:
      1. 3054865Domain d6gaya1: 6gay A:32-138 [354927]
        Other proteins in same PDB: d6gaya2, d6gayb2
        automated match to d5dkla_
        complexed with fmn, so4; mutant
      2. 3054917Domain d6gayb1: 6gay B:34-138 [354979]
        Other proteins in same PDB: d6gaya2, d6gayb2
        automated match to d5dkla_
        complexed with fmn, so4; mutant
    4. Domain for 6gb3:
    5. Domain for 6gba:
    6. Domain for 6gbv:
  7. 2535051Erythrobacter litoralis [TaxId:314225] [261391] (1 PDB entry)
  8. 2535056Fruit fly (Drosophila melanogaster) [TaxId:7227] [226626] (5 PDB entries)
    1. Domains for 4hp4:
      1. 2535059Domain d4hp4a_: 4hp4 A: [222705]
        automated match to d2z6da_
        complexed with gol, so4
      2. 2535060Domain d4hp4b_: 4hp4 B: [222706]
        automated match to d2z6da_
        complexed with gol, so4
    2. Domain for 5f5y:
    3. Domain for 5f68:
    4. Domain for 5f69:
    5. Domain for 5f6a:
  9. 2535063Human (Homo sapiens) [TaxId:9606] [187434] (21 PDB entries)
    1. Domain for 1x0o:
    2. Domain for 2a24:
    3. Domain for 2b02:
    4. Domains for 2hv1:
      1. 2535090Domain d2hv1a_: 2hv1 A: [242077]
        automated match to d3h82b_
      2. 2535091Domain d2hv1b_: 2hv1 B: [242078]
        automated match to d3h82b_
    5. Domain for 2k7s:
    6. Domain for 2kdk:
    7. Domain for 3f1n:
    8. Domain for 3f1o:
    9. Domain for 3f1p:
    10. Domain for 3h7w:
    11. Domain for 3h82:
    12. Domains for 4eq1:
      1. 2535075Domain d4eq1a1: 4eq1 A:357-464 [196838]
        Other proteins in same PDB: d4eq1a2, d4eq1b2
        automated match to d3h82b_
        complexed with pe5
      2. 2535076Domain d4eq1b1: 4eq1 B:357-464 [201946]
        Other proteins in same PDB: d4eq1a2, d4eq1b2
        automated match to d4eq1a_
        complexed with pe5
    13. Domain for 4ghi:
    14. Domain for 4gs9:
    15. Domain for 4h6j:
    16. Domains for 4lpz:
      1. 2535087Domain d4lpza_: 4lpz A: [257846]
        automated match to d1x0oa_
      2. 2535088Domain d4lpzb_: 4lpz B: [262964]
        automated match to d1x0oa_
    17. Domains for 4wn5:
      1. 2535064Domain d4wn5a1: 4wn5 A:237-343 [275696]
        Other proteins in same PDB: d4wn5a2
        automated match to d1p97a_
        complexed with mvc, p6g, so4
      2. 2535065Domain d4wn5b_: 4wn5 B: [275698]
        Other proteins in same PDB: d4wn5a2
        automated match to d1p97a_
        complexed with mvc, p6g, so4
    18. Domains for 4xt2:
      1. 2535077Domain d4xt2b_: 4xt2 B: [280107]
        Other proteins in same PDB: d4xt2a1, d4xt2a2, d4xt2c1, d4xt2c2
        automated match to d1x0oa_
        complexed with 43l
      2. 2535078Domain d4xt2d_: 4xt2 D: [280104]
        Other proteins in same PDB: d4xt2a1, d4xt2a2, d4xt2c1, d4xt2c2
        automated match to d1x0oa_
        complexed with 43l
    19. Domains for 5j7e:
      1. 2535079Domain d5j7ea_: 5j7e A: [317060]
        automated match to d4hp4b_
      2. 2535080Domain d5j7eb_: 5j7e B: [317042]
        automated match to d4hp4b_
      3. 2535081Domain d5j7ec_: 5j7e C: [317035]
        automated match to d4hp4b_
      4. 2535082Domain d5j7ed_: 5j7e D: [317010]
        automated match to d4hp4b_
      5. 2535083Domain d5j7ee_: 5j7e E: [317123]
        automated match to d4hp4b_
      6. 2535084Domain d5j7ef_: 5j7e F: [317031]
        automated match to d4hp4b_
    20. Domain for 5tbm:
    21. Domain for 5ufp:
  10. 2535095Mouse (Mus musculus) [TaxId:10090] [196720] (2 PDB entries)
    1. Domains for 4hoi:
      1. 2535096Domain d4hoia1: 4hoi A:28-137 [197389]
        Other proteins in same PDB: d4hoia2, d4hoib2
        automated match to d1bywa_
        complexed with so4
      2. 2535097Domain d4hoib1: 4hoi B:28-137 [202454]
        Other proteins in same PDB: d4hoia2, d4hoib2
        automated match to d4hoia_
        complexed with so4
      3. 2535098Domain d4hoic_: 4hoi C: [202455]
        Other proteins in same PDB: d4hoia2, d4hoib2
        automated match to d4hoid_
        complexed with so4
      4. 2535099Domain d4hoid_: 4hoi D: [196721]
        Other proteins in same PDB: d4hoia2, d4hoib2
        automated match to d1bywa_
        complexed with so4
    2. Domains for 4llo:
      1. 2535100Domain d4llob_: 4llo B: [224697]
        automated match to d4hp9a_
      2. 2535101Domain d4llod_: 4llo D: [224698]
        automated match to d4hp9a_
      3. 2535102Domain d4llof_: 4llo F: [224699]
        automated match to d4hp9a_
      4. 2535103Domain d4lloh_: 4llo H: [224700]
        automated match to d4hp9a_
  11. 2535104Phaeodactylum tricornutum [TaxId:2850] [280317] (3 PDB entries)
    1. Domains for 5a8b:
      1. 2535109Domain d5a8ba_: 5a8b A: [312468]
        Other proteins in same PDB: d5a8bc2
        automated match to d5dklb_
        complexed with cl, fmn, gol
      2. 2535110Domain d5a8bb_: 5a8b B: [313053]
        Other proteins in same PDB: d5a8bc2
        automated match to d5dklb_
        complexed with cl, fmn, gol
      3. 2535111Domain d5a8bc1: 5a8b C:238-370 [313078]
        Other proteins in same PDB: d5a8bc2
        automated match to d5dklb_
        complexed with cl, fmn, gol
      4. 2535112Domain d5a8bd_: 5a8b D: [313093]
        Other proteins in same PDB: d5a8bc2
        automated match to d5dklb_
        complexed with cl, fmn, gol
    2. Domains for 5dkk:
      1. 2535105Domain d5dkka_: 5dkk A: [280320]
        automated match to d3ue6e_
        complexed with act, edo, fmn
      2. 2535106Domain d5dkkb_: 5dkk B: [280321]
        automated match to d3ue6e_
        complexed with act, edo, fmn
    3. Domains for 5dkl:
      1. 2535107Domain d5dkla_: 5dkl A: [280319]
        automated match to d3ue6e_
        complexed with fmn
      2. 2535108Domain d5dklb_: 5dkl B: [280318]
        automated match to d3ue6e_
        complexed with fmn
  12. 2535113Pseudomonas putida [TaxId:160488] [256090] (4 PDB entries)
    1. Domains for 3sw1:
      1. 2535114Domain d3sw1a_: 3sw1 A: [249585]
        automated match to d1ew0a_
        complexed with fmn
      2. 2535115Domain d3sw1b_: 3sw1 B: [249586]
        automated match to d1ew0a_
        complexed with fmn
    2. Domains for 5j3w:
      1. 2535117Domain d5j3wa_: 5j3w A: [318800]
        automated match to d1ew0a_
        complexed with fmn
      2. 2535118Domain d5j3wb_: 5j3w B: [318846]
        automated match to d1ew0a_
        complexed with fmn
      3. 2535119Domain d5j3wc_: 5j3w C: [318836]
        automated match to d1ew0a_
        complexed with fmn
      4. 2535120Domain d5j3wd_: 5j3w D: [318805]
        automated match to d1ew0a_
        complexed with fmn
    3. Domain for 5luv:
    4. Domains for 6gg9:
      1. 3055101Domain d6gg9d_: 6gg9 D: [355163]
        Other proteins in same PDB: d6gg9a2
        automated match to d5j3wa_
        complexed with fmn; mutant
      2. 3055105Domain d6gg9c_: 6gg9 C: [355167]
        Other proteins in same PDB: d6gg9a2
        automated match to d5j3wa_
        complexed with fmn; mutant
      3. 3055107Domain d6gg9a1: 6gg9 A:1-132 [355169]
        Other proteins in same PDB: d6gg9a2
        automated match to d5j3wa_
        complexed with fmn; mutant
      4. 3055127Domain d6gg9b_: 6gg9 B: [355189]
        Other proteins in same PDB: d6gg9a2
        automated match to d5j3wa_
        complexed with fmn; mutant
  13. 2535121Pseudomonas putida [TaxId:303] [318790] (1 PDB entry)
  14. 2535126Pseudomonas putida [TaxId:390235] [330064] (1 PDB entry)
  15. 2535128Rhodopseudomonas palustris [TaxId:1076] [335300] (2 PDB entries)
    1. Domain for 5vik:
    2. Domain for 5viq:
  16. 2535131Rhodopseudomonas palustris [TaxId:258594] [226419] (1 PDB entry)
  17. 2535134Stigmatella aurantiaca [TaxId:378806] [317293] (2 PDB entries)
    1. Domain for 4rpw:
    2. Domain for 4rq9:
  18. 2535137Synechocystis sp. [TaxId:1148] [256163] (1 PDB entry)
  19. 2535139Thale cress (Arabidopsis thaliana) [TaxId:3702] [188508] (5 PDB entries)
    1. Domains for 2z6c:
      1. 2535140Domain d2z6ca_: 2z6c A: [171068]
        automated match to d1n9na_
        complexed with fmn
      2. 2535141Domain d2z6cb_: 2z6c B: [171069]
        automated match to d1n9na_
        complexed with fmn
    2. Domains for 5svg:
      1. 2535150Domain d5svga_: 5svg A: [330773]
        automated match to d4r38b_
        complexed with fmn
      2. 2535151Domain d5svgb_: 5svg B: [330881]
        automated match to d4r38b_
        complexed with fmn
      3. 2535152Domain d5svgc_: 5svg C: [330885]
        automated match to d4r38b_
        complexed with fmn
      4. 2535153Domain d5svgd_: 5svg D: [330780]
        automated match to d4r38b_
        complexed with fmn
    3. Domains for 5svu:
      1. 2535154Domain d5svua_: 5svu A: [330804]
        automated match to d4r38b_
        complexed with fmn
      2. 2535155Domain d5svub_: 5svu B: [330911]
        automated match to d4r38b_
        complexed with fmn
      3. 2535156Domain d5svuc_: 5svu C: [330772]
        automated match to d4r38b_
        complexed with fmn
      4. 2535157Domain d5svud_: 5svu D: [330811]
        automated match to d4r38b_
        complexed with fmn
    4. Domains for 5svv:
      1. 2535142Domain d5svva_: 5svv A: [330837]
        automated match to d4r38b_
        complexed with act, fmn, gol
      2. 2535143Domain d5svvb_: 5svv B: [330863]
        automated match to d4r38b_
        complexed with act, fmn, gol
      3. 2535144Domain d5svvc_: 5svv C: [330810]
        automated match to d4r38b_
        complexed with act, fmn, gol
      4. 2535145Domain d5svvd_: 5svv D: [330793]
        automated match to d4r38b_
        complexed with act, fmn, gol
    5. Domains for 5svw:
      1. 2535146Domain d5svwa_: 5svw A: [330774]
        automated match to d4r38b_
        complexed with fmn
      2. 2535147Domain d5svwb_: 5svw B: [330852]
        automated match to d4r38b_
        complexed with fmn
      3. 2535148Domain d5svwc_: 5svw C: [330812]
        automated match to d4r38b_
        complexed with fmn
      4. 2535149Domain d5svwd_: 5svw D: [330779]
        automated match to d4r38b_
        complexed with fmn
  20. 2535158Vaucheria frigida [TaxId:195983] [256118] (2 PDB entries)
    1. Domains for 3ue6:
      1. 2535159Domain d3ue6a_: 3ue6 A: [250200]
        automated match to d2z6da_
        complexed with fmn, po4
      2. 2535160Domain d3ue6b_: 3ue6 B: [250201]
        automated match to d2z6da_
        complexed with fmn, po4
      3. 2535161Domain d3ue6c_: 3ue6 C: [250202]
        automated match to d2z6da_
        complexed with fmn, po4
      4. 2535162Domain d3ue6d_: 3ue6 D: [250203]
        automated match to d2z6da_
        complexed with fmn, po4
      5. 2535163Domain d3ue6e_: 3ue6 E: [250204]
        automated match to d2z6da_
        complexed with fmn, po4
      6. 2535164Domain d3ue6f_: 3ue6 F: [250205]
        automated match to d2z6da_
        complexed with fmn, po4
    2. Domains for 3ulf:
      1. 2535165Domain d3ulfa_: 3ulf A: [250232]
        automated match to d2z6da_
        complexed with fmn, po4
      2. 2535166Domain d3ulfb_: 3ulf B: [250233]
        automated match to d2z6da_
        complexed with fmn, po4
      3. 2535167Domain d3ulfc_: 3ulf C: [250234]
        automated match to d2z6da_
        complexed with fmn, po4
      4. 2535168Domain d3ulfd_: 3ulf D: [250235]
        automated match to d2z6da_
        complexed with fmn, po4
      5. 2535169Domain d3ulfe_: 3ulf E: [250236]
        automated match to d2z6da_
        complexed with fmn, po4
      6. 2535170Domain d3ulff_: 3ulf F: [250237]
        automated match to d2z6da_
        complexed with fmn, po4

More info for Protein automated matches from d.110.3.0: automated matches

Timeline for Protein automated matches from d.110.3.0: automated matches: