SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2188697Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 2188938Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (8 families) (S)
    alpha-beta(2)-alpha(2)-beta(3)
  5. 2189175Family d.110.3.0: automated matches [191387] (1 protein)
    not a true family
  6. 2189176Protein automated matches [190492] (19 species)
    not a true protein

Species:

  1. 2189177Azotobacter vinelandii [TaxId:354] [187754] (1 PDB entry)
  2. 2189180Bacillus subtilis [TaxId:1423] [225313] (2 PDB entries)
    1. Domains for 2pr5:
      1. 2189181Domain d2pr5a_: 2pr5 A: [205596]
        automated match to d4hoia_
        complexed with acy, fmn, na
      2. 2189182Domain d2pr5b_: 2pr5 B: [205597]
        automated match to d4hoia_
        complexed with acy, fmn, na
    2. Domains for 2pr6:
      1. 2189183Domain d2pr6a_: 2pr6 A: [205598]
        automated match to d4hoia_
        complexed with fmn
      2. 2189184Domain d2pr6b_: 2pr6 B: [205599]
        automated match to d4hoia_
        complexed with fmn
  3. 2189185Brucella melitensis [TaxId:29459] [226408] (1 PDB entry)
  4. 2189188Deinococcus radiodurans [TaxId:1299] [226273] (5 PDB entries)
    1. Domain for 3s7n:
    2. Domain for 3s7o:
    3. Domain for 3s7p:
    4. Domain for 3s7q:
    5. Domain for 4cqh:
  5. 2189194Deinococcus radiodurans [TaxId:243230] [230052] (1 PDB entry)
  6. 2189196Dinoroseobacter shibae [TaxId:398580] [261211] (2 PDB entries)
    1. Domain for 4kuk:
    2. Domain for 4kuo:
  7. 2189199Erythrobacter litoralis [TaxId:314225] [261391] (1 PDB entry)
  8. 2189204Fruit fly (Drosophila melanogaster) [TaxId:7227] [226626] (5 PDB entries)
    1. Domains for 4hp4:
      1. 2189205Domain d4hp4a_: 4hp4 A: [222705]
        automated match to d2z6da_
        complexed with gol, so4
      2. 2189206Domain d4hp4b_: 4hp4 B: [222706]
        automated match to d2z6da_
        complexed with gol, so4
    2. Domain for 5f5y:
    3. Domain for 5f68:
    4. Domain for 5f69:
    5. Domain for 5f6a:
  9. 2189207Human (Homo sapiens) [TaxId:9606] [187434] (22 PDB entries)
    1. Domain for 1x0o:
    2. Domain for 2a24:
    3. Domain for 2b02:
    4. Domains for 2hv1:
      1. 2189226Domain d2hv1a_: 2hv1 A: [242077]
        automated match to d3h82b_
      2. 2189227Domain d2hv1b_: 2hv1 B: [242078]
        automated match to d3h82b_
    5. Domain for 2k7s:
    6. Domain for 2kdk:
    7. Domain for 3f1n:
    8. Domain for 3f1o:
    9. Domain for 3f1p:
    10. Domain for 3h7w:
    11. Domain for 3h82:
    12. Domains for 4eq1:
      1. 2189217Domain d4eq1a1: 4eq1 A:357-464 [196838]
        Other proteins in same PDB: d4eq1a2, d4eq1b2
        automated match to d3h82b_
        complexed with pe5
      2. 2189218Domain d4eq1b1: 4eq1 B:357-464 [201946]
        Other proteins in same PDB: d4eq1a2, d4eq1b2
        automated match to d4eq1a_
        complexed with pe5
    13. Domain for 4ghi:
    14. Domain for 4gs9:
    15. Domain for 4h6j:
    16. Domains for 4lpz:
      1. 2189223Domain d4lpza_: 4lpz A: [257846]
        automated match to d1x0oa_
      2. 2189224Domain d4lpzb_: 4lpz B: [262964]
        automated match to d1x0oa_
    17. Domains for 4wn5:
      1. 2189209Domain d4wn5a1: 4wn5 A:237-343 [275696]
        Other proteins in same PDB: d4wn5a2
        automated match to d1p97a_
        complexed with mvc, p6g, so4
      2. 2189210Domain d4wn5b_: 4wn5 B: [275698]
        Other proteins in same PDB: d4wn5a2
        automated match to d1p97a_
        complexed with mvc, p6g, so4
    18. Domains for 4xt2:
      1. 2189221Domain d4xt2b_: 4xt2 B: [280107]
        Other proteins in same PDB: d4xt2a1, d4xt2a2, d4xt2c1, d4xt2c2
        automated match to d1x0oa_
        complexed with 43l
      2. 2189222Domain d4xt2d_: 4xt2 D: [280104]
        Other proteins in same PDB: d4xt2a1, d4xt2a2, d4xt2c1, d4xt2c2
        automated match to d1x0oa_
        complexed with 43l
    19. Domains for 5j7e:
      1. 2273709Domain d5j7ed_: 5j7e D: [317010]
        automated match to d4hp4b_
      2. 2273730Domain d5j7ef_: 5j7e F: [317031]
        automated match to d4hp4b_
      3. 2273734Domain d5j7ec_: 5j7e C: [317035]
        automated match to d4hp4b_
      4. 2273741Domain d5j7eb_: 5j7e B: [317042]
        automated match to d4hp4b_
      5. 2273759Domain d5j7ea_: 5j7e A: [317060]
        automated match to d4hp4b_
      6. 2273822Domain d5j7ee_: 5j7e E: [317123]
        automated match to d4hp4b_
    20. Domain for 5t0t:
    21. Domain for 5tbm:
    22. Domain for 5ufp:
  10. 2189231Mouse (Mus musculus) [TaxId:10090] [196720] (2 PDB entries)
    1. Domains for 4hoi:
      1. 2189232Domain d4hoia1: 4hoi A:28-137 [197389]
        Other proteins in same PDB: d4hoia2, d4hoib2
        automated match to d1bywa_
        complexed with so4
      2. 2189233Domain d4hoib1: 4hoi B:28-137 [202454]
        Other proteins in same PDB: d4hoia2, d4hoib2
        automated match to d4hoia_
        complexed with so4
      3. 2189234Domain d4hoic_: 4hoi C: [202455]
        Other proteins in same PDB: d4hoia2, d4hoib2
        automated match to d4hoid_
        complexed with so4
      4. 2189235Domain d4hoid_: 4hoi D: [196721]
        Other proteins in same PDB: d4hoia2, d4hoib2
        automated match to d1bywa_
        complexed with so4
    2. Domains for 4llo:
      1. 2189236Domain d4llob_: 4llo B: [224697]
        automated match to d4hp9a_
      2. 2189237Domain d4llod_: 4llo D: [224698]
        automated match to d4hp9a_
      3. 2189238Domain d4llof_: 4llo F: [224699]
        automated match to d4hp9a_
      4. 2189239Domain d4lloh_: 4llo H: [224700]
        automated match to d4hp9a_
  11. 2189240Phaeodactylum tricornutum [TaxId:2850] [280317] (3 PDB entries)
    1. Domains for 5a8b:
      1. 2269162Domain d5a8ba_: 5a8b A: [312468]
        Other proteins in same PDB: d5a8bc2
        automated match to d5dklb_
        complexed with cl, fmn, gol
      2. 2269748Domain d5a8bb_: 5a8b B: [313053]
        Other proteins in same PDB: d5a8bc2
        automated match to d5dklb_
        complexed with cl, fmn, gol
      3. 2269773Domain d5a8bc1: 5a8b C:238-370 [313078]
        Other proteins in same PDB: d5a8bc2
        automated match to d5dklb_
        complexed with cl, fmn, gol
      4. 2269788Domain d5a8bd_: 5a8b D: [313093]
        Other proteins in same PDB: d5a8bc2
        automated match to d5dklb_
        complexed with cl, fmn, gol
    2. Domains for 5dkk:
      1. 2189241Domain d5dkka_: 5dkk A: [280320]
        automated match to d3ue6e_
        complexed with act, edo, fmn
      2. 2189242Domain d5dkkb_: 5dkk B: [280321]
        automated match to d3ue6e_
        complexed with act, edo, fmn
    3. Domains for 5dkl:
      1. 2189243Domain d5dkla_: 5dkl A: [280319]
        automated match to d3ue6e_
        complexed with fmn
      2. 2189244Domain d5dklb_: 5dkl B: [280318]
        automated match to d3ue6e_
        complexed with fmn
  12. 2189245Pseudomonas putida [TaxId:160488] [256090] (3 PDB entries)
    1. Domains for 3sw1:
      1. 2189246Domain d3sw1a_: 3sw1 A: [249585]
        automated match to d1ew0a_
        complexed with fmn
      2. 2189247Domain d3sw1b_: 3sw1 B: [249586]
        automated match to d1ew0a_
        complexed with fmn
    2. Domains for 5j3w:
      1. 2275499Domain d5j3wa_: 5j3w A: [318800]
        automated match to d1ew0a_
        complexed with fmn
      2. 2275504Domain d5j3wd_: 5j3w D: [318805]
        automated match to d1ew0a_
        complexed with fmn
      3. 2275535Domain d5j3wc_: 5j3w C: [318836]
        automated match to d1ew0a_
        complexed with fmn
      4. 2275545Domain d5j3wb_: 5j3w B: [318846]
        automated match to d1ew0a_
        complexed with fmn
    3. Domain for 5luv:
  13. 2189248Rhodopseudomonas palustris [TaxId:258594] [226419] (1 PDB entry)
  14. 2189251Synechocystis sp. [TaxId:1148] [256163] (1 PDB entry)
  15. 2189253Thale cress (Arabidopsis thaliana) [TaxId:3702] [188508] (5 PDB entries)
    1. Domains for 2z6c:
      1. 2189254Domain d2z6ca_: 2z6c A: [171068]
        automated match to d1n9na_
        complexed with fmn
      2. 2189255Domain d2z6cb_: 2z6c B: [171069]
        automated match to d1n9na_
        complexed with fmn
    2. Domains for 5svg:
      1. 2287472Domain d5svga_: 5svg A: [330773]
        automated match to d4r38b_
        complexed with fmn
      2. 2287479Domain d5svgd_: 5svg D: [330780]
        automated match to d4r38b_
        complexed with fmn
      3. 2287580Domain d5svgb_: 5svg B: [330881]
        automated match to d4r38b_
        complexed with fmn
      4. 2287584Domain d5svgc_: 5svg C: [330885]
        automated match to d4r38b_
        complexed with fmn
    3. Domains for 5svu:
      1. 2287471Domain d5svuc_: 5svu C: [330772]
        automated match to d4r38b_
        complexed with fmn
      2. 2287503Domain d5svua_: 5svu A: [330804]
        automated match to d4r38b_
        complexed with fmn
      3. 2287510Domain d5svud_: 5svu D: [330811]
        automated match to d4r38b_
        complexed with fmn
      4. 2287610Domain d5svub_: 5svu B: [330911]
        automated match to d4r38b_
        complexed with fmn
    4. Domains for 5svv:
      1. 2287492Domain d5svvd_: 5svv D: [330793]
        automated match to d4r38b_
        complexed with act, fmn, gol
      2. 2287509Domain d5svvc_: 5svv C: [330810]
        automated match to d4r38b_
        complexed with act, fmn, gol
      3. 2287536Domain d5svva_: 5svv A: [330837]
        automated match to d4r38b_
        complexed with act, fmn, gol
      4. 2287562Domain d5svvb_: 5svv B: [330863]
        automated match to d4r38b_
        complexed with act, fmn, gol
    5. Domains for 5svw:
      1. 2287473Domain d5svwa_: 5svw A: [330774]
        automated match to d4r38b_
        complexed with fmn
      2. 2287478Domain d5svwd_: 5svw D: [330779]
        automated match to d4r38b_
        complexed with fmn
      3. 2287511Domain d5svwc_: 5svw C: [330812]
        automated match to d4r38b_
        complexed with fmn
      4. 2287551Domain d5svwb_: 5svw B: [330852]
        automated match to d4r38b_
        complexed with fmn
  16. 2189256Vaucheria frigida [TaxId:195983] [256118] (2 PDB entries)
    1. Domains for 3ue6:
      1. 2189257Domain d3ue6a_: 3ue6 A: [250200]
        automated match to d2z6da_
        complexed with fmn, po4
      2. 2189258Domain d3ue6b_: 3ue6 B: [250201]
        automated match to d2z6da_
        complexed with fmn, po4
      3. 2189259Domain d3ue6c_: 3ue6 C: [250202]
        automated match to d2z6da_
        complexed with fmn, po4
      4. 2189260Domain d3ue6d_: 3ue6 D: [250203]
        automated match to d2z6da_
        complexed with fmn, po4
      5. 2189261Domain d3ue6e_: 3ue6 E: [250204]
        automated match to d2z6da_
        complexed with fmn, po4
      6. 2189262Domain d3ue6f_: 3ue6 F: [250205]
        automated match to d2z6da_
        complexed with fmn, po4
    2. Domains for 3ulf:
      1. 2189263Domain d3ulfa_: 3ulf A: [250232]
        automated match to d2z6da_
        complexed with fmn, po4
      2. 2189264Domain d3ulfb_: 3ulf B: [250233]
        automated match to d2z6da_
        complexed with fmn, po4
      3. 2189265Domain d3ulfc_: 3ulf C: [250234]
        automated match to d2z6da_
        complexed with fmn, po4
      4. 2189266Domain d3ulfd_: 3ulf D: [250235]
        automated match to d2z6da_
        complexed with fmn, po4
      5. 2189267Domain d3ulfe_: 3ulf E: [250236]
        automated match to d2z6da_
        complexed with fmn, po4
      6. 2189268Domain d3ulff_: 3ulf F: [250237]
        automated match to d2z6da_
        complexed with fmn, po4
  17. 2273992Stigmatella aurantiaca [TaxId:378806] [317293] (2 PDB entries)
    1. Domain for 4rpw:
    2. Domain for 4rq9:
  18. 2275489Pseudomonas putida [TaxId:303] [318790] (1 PDB entry)
  19. 2286763Pseudomonas putida [TaxId:390235] [330064] (1 PDB entry)

More info for Protein automated matches from d.110.3.0: automated matches

Timeline for Protein automated matches from d.110.3.0: automated matches: