SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5mn9a_ (5mn9 A:)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2158219Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2158220Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2158221Family d.15.1.1: Ubiquitin-related [54237] (39 protein domains)
    Pfam PF00240
  6. 2158454Protein Ubiquitin [54238] (8 species)
  7. 2158468Species Cow (Bos taurus) [TaxId:9913] [224919] (33 PDB entries)
  8. 2285858Domain d5mn9a_: 5mn9 A: [329159]
    automated match to d1ogwa_

Details for d5mn9a_

PDB Entry: 5mn9 (more details), 2.05 Å

PDB Description: crystal structure of mindy-1 tmiu in complex with k48-diub
PDB Compounds: (A:) Ubiquitin-40S ribosomal protein S27a

SCOPe Domain Sequences for d5mn9a_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5mn9a_ d.15.1.1 (A:) Ubiquitin {Cow (Bos taurus) [TaxId: 9913]}

SCOPe Domain Coordinates for d5mn9a_:

Click to download the PDB-style file with coordinates for d5mn9a_.
(The format of our PDB-style files is described here.)

Timeline for d5mn9a_:

  • d5mn9a_ appears in periodic updates to SCOPe 2.06 starting on 2017-01-26

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