SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Family d.15.1.1: Ubiquitin-related

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2158219Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2158220Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2158221Family d.15.1.1: Ubiquitin-related [54237] (39 protein domains)
    Pfam PF00240

Protein Domains:

  1. 21582221700011n24rik protein [110796] (1 species)
  2. 21582252'-5'-oligoadenylate synthetase-like protein, OASL [117808] (1 species)
  3. 21582284931431F19Rik [142950] (1 species)
  4. 21582318430435i17rik protein [110798] (1 species)
  5. 2158234Bag-family molecular chaperone regulator-1 [142932] (2 species)
    1. 2158235Species Human (Homo sapiens) [TaxId:9606] [142933] (1 PDB entry)
      Uniprot Q99933 72-152
      the BAG domain structure is also known (63494)
    2. 2158237Species Mouse (Mus musculus) [TaxId:10090] [255463] (2 PDB entries)
  6. 2158240Dendritic cell-derived ubiquitin-like protein [142954] (1 species)
  7. 2158243DSK2 [142940] (1 species)
  8. 2158246Elongin B [54246] (2 species)
    1. 2158247Species Human (Homo sapiens) [TaxId:9606] [54247] (30 PDB entries)
    2. 2158344Species Mouse (Mus musculus) [TaxId:10090] [142930] (1 PDB entry)
      Uniprot P62869 1-98
  9. 2158346Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 [117802] (1 species)
  10. 2158349hypothetical D7wsu128e protein [110800] (1 species)
  11. 2158352Hypothetical protein At3g01050 [102782] (1 species)
  12. 2158355Interferon-induced 15 kDa protein [142936] (1 species)
  13. 2158359Large proline-rich protein BAT3 [142952] (1 species)
  14. 2158362Nedd8 [54244] (1 species)
  15. 2158402NEDD8 ultimate buster-1, NUB1 [117814] (1 species)
  16. 2158405NPL4-like protein 1 [142934] (1 species)
  17. 2158408Rub1 [54248] (1 species)
  18. 2158411Splicing factor 3 subunit 1, C-terminal domain [117799] (3 species)
    1. 2158412Species Human (Homo sapiens) [TaxId:9606] [142931] (1 PDB entry)
      Uniprot Q15459 704-789
    2. 2158414Species Mouse (Mus musculus) [TaxId:10090] [117800] (1 PDB entry)
      Uniprot Q8K4Z5 685-786
    3. 2158416Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [117801] (1 PDB entry)
      SQ Q8RXF1 683-780; T5E21.13/At1g14650
  19. 2158418SUMO-1 (smt3 homologue) [54241] (3 species)
    1. 2158419Species Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [54243] (3 PDB entries)
    2. 2158424Species Fruit fly (Drosophila melanogaster) [TaxId:7227] [256390] (1 PDB entry)
    3. 2158426Species Human (Homo sapiens) [TaxId:9606] [54242] (10 PDB entries)
      Uniprot Q93068
  20. 2158435SUMO-2 [117816] (1 species)
  21. 2158447Tubulin-folding protein TbcE [117812] (1 species)
  22. 2158450Ubiquilin-3 [142946] (1 species)
  23. 2158454Ubiquitin [54238] (7 species)
    1. 2158455Species African clawed frog (Xenopus laevis) [TaxId:8355] [224918] (1 PDB entry)
    2. 2158457Species Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [89830] (9 PDB entries)
    3. 2158468Species Cow (Bos taurus) [TaxId:9913] [224919] (33 PDB entries)
    4. 2158532Species Human (Homo sapiens) [TaxId:9606] [54239] (170 PDB entries)
      Uniprot P62988
      identical sequence in many other species
    5. 2158857Species Mouse (Mus musculus) [TaxId:10090] [190020] (9 PDB entries)
    6. 2158882Species Norway rat (Rattus norvegicus) [TaxId:10116] [224920] (1 PDB entry)
    7. 2158884Species Synthetic, based on Saccharomyces cerevisiae sequence [54240] (1 PDB entry)
  24. 2158887Ubiquitin carboxyl-terminal hydrolase 14 [117804] (1 species)
  25. 2158890Ubiquitin-like domain of parkin [89831] (2 species)
    1. 2158891Species Human (Homo sapiens) [TaxId:9606] [89832] (2 PDB entries)
    2. 2158893Species Mouse (Mus musculus) [TaxId:10090] [89833] (2 PDB entries)
  26. 2158896Ubiquitin-like domain of Rad23 homolog A (Hhr23a) [102775] (1 species)
  27. 2158902Ubiquitin-like domain of Rad23 homolog B (Hhr23B) [102777] (1 species)
  28. 2158906Ubiquitin-like domain of tubulin folding cofactor B [102786] (2 species)
    1. 2158907Species Mouse (Mus musculus) [TaxId:10090] [117798] (1 PDB entry)
      Uniprot Q9D1E6 11-92
    2. 2158909Species Nematode (Caenorhabditis elegans) [TaxId:6239] [102787] (1 PDB entry)
  29. 2158911Ubiquitin-like modifier protein hub1 [82579] (1 species)
  30. 2158914Ubiquitin-like N-terminal domain of PLIC-2 [75358] (1 species)
  31. 2158917Ubiquitin-like PHD and RING finger domain-containing protein 1 [142948] (1 species)
  32. 2158920Ubiquitin-like PHD and RING finger domain-containing protein 2 [142944] (1 species)
  33. 2158923Ubiquitin-like protein 3, Ubl3 [117806] (1 species)
  34. 2158926Ubiquitin-like protein 3300001g02rik [102784] (1 species)
  35. 2158929Ubiquitin-like protein 5, ubl5 [102779] (2 species)
    1. 2158930Species Human (Homo sapiens) [TaxId:9606] [102780] (1 PDB entry)
    2. 2158932Species Mouse (Mus musculus) [TaxId:10090] [102781] (1 PDB entry)
  36. 2158934Ubiquitin-like protein 7 [142942] (1 species)
  37. 2158937Ubiquitin-like protein bab25500 (2010008E23Rik) [117810] (1 species)
  38. 2158940Ubiquitin-like protein smt3a, SUMO-3 [142938] (1 species)
  39. 2158943automated matches [190118] (10 species)
    not a true protein
    1. 2158944Species African clawed frog (Xenopus laevis) [TaxId:8355] [255337] (1 PDB entry)
    2. 2158947Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189675] (2 PDB entries)
    3. 2158951Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [193751] (7 PDB entries)
    4. 2158958Species Cow (Bos taurus) [TaxId:9913] [197078] (5 PDB entries)
    5. 2158964Species Entamoeba (Entamoeba histolytica) [TaxId:5759] [193323] (2 PDB entries)
    6. 2158968Species Human (Homo sapiens) [TaxId:9606] [189560] (85 PDB entries)
    7. 2159126Species Mouse (Mus musculus) [TaxId:10090] [187278] (3 PDB entries)
    8. 2159131Species Paramecium tetraurelia strain d4-2 [TaxId:412030] [161334] (1 PDB entry)
    9. 2159133Species Schizosaccharomyces pombe [TaxId:284812] [196615] (2 PDB entries)
    10. 2286478Species Pseudozyma antarctica [TaxId:84753] [329779] (1 PDB entry)

More info for Family d.15.1.1: Ubiquitin-related

Timeline for Family d.15.1.1: Ubiquitin-related: