SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar

Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)
Family c.2.1.5: LDH N-terminal domain-like [51848] (9 proteins)
Protein automated matches [226881] (5 species)
not a true protein

Species:

Haloarcula marismortui [TaxId:2238] [225147] (4 PDB entries)
1. Domains for 2j5k:
  1. Domain d2j5ka1: 2j5k A:22-162 [138037]
    Other proteins in same PDB: d2j5ka2, d2j5kb2, d2j5kc2, d2j5kd2
    automated match to d1o6za1
    complexed with cl
  2. Domain d2j5kb1: 2j5k B:22-162 [138039]
    Other proteins in same PDB: d2j5ka2, d2j5kb2, d2j5kc2, d2j5kd2
    automated match to d1o6za1
    complexed with cl
  3. Domain d2j5kc1: 2j5k C:22-162 [138041]
    Other proteins in same PDB: d2j5ka2, d2j5kb2, d2j5kc2, d2j5kd2
    automated match to d1o6za1
    complexed with cl
  4. Domain d2j5kd1: 2j5k D:22-162 [138043]
    Other proteins in same PDB: d2j5ka2, d2j5kb2, d2j5kc2, d2j5kd2
    automated match to d1o6za1
    complexed with cl
2. Domains for 2j5q:
  1. Domain d2j5qa1: 2j5q A:22-162 [138051]
    Other proteins in same PDB: d2j5qa2, d2j5qb2, d2j5qc2, d2j5qd2
    automated match to d1o6za1
    complexed with cl
  2. Domain d2j5qb1: 2j5q B:22-162 [138053]
    Other proteins in same PDB: d2j5qa2, d2j5qb2, d2j5qc2, d2j5qd2
    automated match to d1o6za1
    complexed with cl
  3. Domain d2j5qc1: 2j5q C:22-162 [138055]
    Other proteins in same PDB: d2j5qa2, d2j5qb2, d2j5qc2, d2j5qd2
    automated match to d1o6za1
    complexed with cl
  4. Domain d2j5qd1: 2j5q D:22-162 [138057]
    Other proteins in same PDB: d2j5qa2, d2j5qb2, d2j5qc2, d2j5qd2
    automated match to d1o6za1
    complexed with cl
3. Domains for 2j5r:
  1. Domain d2j5ra1: 2j5r A:22-162 [138059]
    Other proteins in same PDB: d2j5ra2, d2j5rb2, d2j5rc2, d2j5rd2
    automated match to d1o6za1
    complexed with cl
  2. Domain d2j5rb1: 2j5r B:22-162 [138061]
    Other proteins in same PDB: d2j5ra2, d2j5rb2, d2j5rc2, d2j5rd2
    automated match to d1o6za1
    complexed with cl
  3. Domain d2j5rc1: 2j5r C:22-162 [138063]
    Other proteins in same PDB: d2j5ra2, d2j5rb2, d2j5rc2, d2j5rd2
    automated match to d1o6za1
    complexed with cl
  4. Domain d2j5rd1: 2j5r D:22-162 [138065]
    Other proteins in same PDB: d2j5ra2, d2j5rb2, d2j5rc2, d2j5rd2
    automated match to d1o6za1
    complexed with cl
4. Domains for 4jco:
  1. Domain d4jcoa1: 4jco A:22-162 [223695]
    Other proteins in same PDB: d4jcoa2, d4jcob2, d4jcoc2, d4jcod2
    automated match to d1o6za1
    complexed with cl, na
  2. Domain d4jcob1: 4jco B:22-162 [223697]
    Other proteins in same PDB: d4jcoa2, d4jcob2, d4jcoc2, d4jcod2
    automated match to d1o6za1
    complexed with cl, na
  3. Domain d4jcoc1: 4jco C:22-162 [223699]
    Other proteins in same PDB: d4jcoa2, d4jcob2, d4jcoc2, d4jcod2
    automated match to d1o6za1
    complexed with cl, na
  4. Domain d4jcod1: 4jco D:22-162 [223701]
    Other proteins in same PDB: d4jcoa2, d4jcob2, d4jcoc2, d4jcod2
    automated match to d1o6za1
    complexed with cl, na
Human (Homo sapiens) [TaxId:9606] [225056] (1 PDB entry)
- Domains for 2dfd:
  1. Domain d2dfda1: 2dfd A:6-150 [203977]
    Other proteins in same PDB: d2dfda2, d2dfdb2, d2dfdc2, d2dfdd2
    automated match to d1mlda1
    complexed with ala, cl, his, mlt, nad
  2. Domain d2dfdb1: 2dfd B:6-150 [203979]
    Other proteins in same PDB: d2dfda2, d2dfdb2, d2dfdc2, d2dfdd2
    automated match to d1mlda1
    complexed with ala, cl, his, mlt, nad
  3. Domain d2dfdc1: 2dfd C:6-150 [203981]
    Other proteins in same PDB: d2dfda2, d2dfdb2, d2dfdc2, d2dfdd2
    automated match to d1mlda1
    complexed with ala, cl, his, mlt, nad
  4. Domain d2dfdd1: 2dfd D:6-150 [203983]
    Other proteins in same PDB: d2dfda2, d2dfdb2, d2dfdc2, d2dfdd2
    automated match to d1mlda1
    complexed with ala, cl, his, mlt, nad
Malaria parasite (Plasmodium falciparum) [TaxId:5833] [254908] (5 PDB entries)
1. Domain for 1u4o:
  - Domain d1u4oa1: 1u4o A:18-164 [119527]
    Other proteins in same PDB: d1u4oa2
    automated match to d1t2da1
    complexed with mpd, ndd
2. Domain for 1u4s:
  - Domain d1u4sa1: 1u4s A:18-164 [119529]
    Other proteins in same PDB: d1u4sa2
    automated match to d1t2da1
    complexed with bih
3. Domain for 1u5c:
  - Domain d1u5ca1: 1u5c A:18-164 [119534]
    Other proteins in same PDB: d1u5ca2
    automated match to d1t2da1
    complexed with bik, nad
4. Domain for 1xiv:
  - Domain d1xiva1: 1xiv A:18-164 [122018]
    Other proteins in same PDB: d1xiva2
    automated match to d1t2da1
    complexed with gol, rb2
5. Domain for 4plz:
  - Domain d4plza1: 4plz A:3-150 [258226]
    Other proteins in same PDB: d4plza2
    automated match to d1t2da1
    complexed with nai, oxm; mutant
Rabbit (Oryctolagus cuniculus) [TaxId:9986] [225718] (5 PDB entries)
1. Domains for 3h3f:
  1. Domain d3h3fa1: 3h3f A:1-159 [210814]
    Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
    automated match to d9ldta1
    complexed with act, nai, oxm
  2. Domain d3h3fb1: 3h3f B:1-159 [210816]
    Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
    automated match to d9ldta1
    complexed with act, nai, oxm
  3. Domain d3h3fc1: 3h3f C:1-159 [210818]
    Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
    automated match to d9ldta1
    complexed with act, nai, oxm
  4. Domain d3h3fd1: 3h3f D:1-159 [210820]
    Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
    automated match to d9ldta1
    complexed with act, nai, oxm
  5. Domain d3h3fe1: 3h3f E:1-159 [210822]
    Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
    automated match to d9ldta1
    complexed with act, nai, oxm
  6. Domain d3h3ff1: 3h3f F:1-159 [210824]
    Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
    automated match to d9ldta1
    complexed with act, nai, oxm
  7. Domain d3h3fg1: 3h3f G:1-159 [210826]
    Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
    automated match to d9ldta1
    complexed with act, nai, oxm
  8. Domain d3h3fh1: 3h3f H:1-159 [210828]
    Other proteins in same PDB: d3h3fa2, d3h3fb2, d3h3fc2, d3h3fd2, d3h3fe2, d3h3ff2, d3h3fg2, d3h3fh2
    automated match to d9ldta1
    complexed with act, nai, oxm
2. Domains for 4i8x:
  1. Domain d4i8xa1: 4i8x A:1-159 [223016]
    Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
    automated match to d9ldta1
    complexed with 6p3
  2. Domain d4i8xb1: 4i8x B:1-159 [223018]
    Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
    automated match to d9ldta1
    complexed with 6p3
  3. Domain d4i8xc1: 4i8x C:1-159 [223020]
    Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
    automated match to d9ldta1
    complexed with 6p3
  4. Domain d4i8xd1: 4i8x D:1-159 [223022]
    Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
    automated match to d9ldta1
    complexed with 6p3
  5. Domain d4i8xe1: 4i8x E:1-159 [223024]
    Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
    automated match to d9ldta1
    complexed with 6p3
  6. Domain d4i8xf1: 4i8x F:1-159 [223026]
    Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
    automated match to d9ldta1
    complexed with 6p3
  7. Domain d4i8xg1: 4i8x G:1-159 [223028]
    Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
    automated match to d9ldta1
    complexed with 6p3
  8. Domain d4i8xh1: 4i8x H:1-159 [223030]
    Other proteins in same PDB: d4i8xa2, d4i8xb2, d4i8xc2, d4i8xd2, d4i8xe2, d4i8xf2, d4i8xg2, d4i8xh2
    automated match to d9ldta1
    complexed with 6p3
3. Domains for 4i9h:
  1. Domain d4i9ha1: 4i9h A:1-159 [223034]
    Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
    automated match to d9ldta1
    complexed with 1e4
  2. Domain d4i9hb1: 4i9h B:1-159 [223036]
    Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
    automated match to d9ldta1
    complexed with 1e4
  3. Domain d4i9hc1: 4i9h C:1-159 [223038]
    Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
    automated match to d9ldta1
    complexed with 1e4
  4. Domain d4i9hd1: 4i9h D:1-159 [223040]
    Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
    automated match to d9ldta1
    complexed with 1e4
  5. Domain d4i9he1: 4i9h E:1-159 [223042]
    Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
    automated match to d9ldta1
    complexed with 1e4
  6. Domain d4i9hf1: 4i9h F:1-159 [223044]
    Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
    automated match to d9ldta1
    complexed with 1e4
  7. Domain d4i9hg1: 4i9h G:1-159 [223046]
    Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
    automated match to d9ldta1
    complexed with 1e4
  8. Domain d4i9hh1: 4i9h H:1-159 [223048]
    Other proteins in same PDB: d4i9ha2, d4i9hb2, d4i9hc2, d4i9hd2, d4i9he2, d4i9hf2, d4i9hg2, d4i9hh2
    automated match to d9ldta1
    complexed with 1e4
4. Domains for 4i9n:
  1. Domain d4i9na1: 4i9n A:1-159 [223050]
    Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
    automated match to d9ldta1
    complexed with 1e5, 1e6
  2. Domain d4i9nb1: 4i9n B:1-159 [223052]
    Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
    automated match to d9ldta1
    complexed with 1e5, 1e6
  3. Domain d4i9nc1: 4i9n C:1-159 [223054]
    Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
    automated match to d9ldta1
    complexed with 1e5, 1e6
  4. Domain d4i9nd1: 4i9n D:1-159 [223056]
    Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
    automated match to d9ldta1
    complexed with 1e5, 1e6
  5. Domain d4i9ne1: 4i9n E:1-159 [223058]
    Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
    automated match to d9ldta1
    complexed with 1e5, 1e6
  6. Domain d4i9nf1: 4i9n F:1-159 [223060]
    Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
    automated match to d9ldta1
    complexed with 1e5, 1e6
  7. Domain d4i9ng1: 4i9n G:1-159 [223062]
    Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
    automated match to d9ldta1
    complexed with 1e5, 1e6
  8. Domain d4i9nh1: 4i9n H:1-159 [223064]
    Other proteins in same PDB: d4i9na2, d4i9nb2, d4i9nc2, d4i9nd2, d4i9ne2, d4i9nf2, d4i9ng2, d4i9nh2
    automated match to d9ldta1
    complexed with 1e5, 1e6
5. Domains for 4i9u:
  1. Domain d4i9ua1: 4i9u A:1-159 [223066]
    Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
    automated match to d9ldta1
    complexed with 1e7
  2. Domain d4i9ub1: 4i9u B:1-159 [223068]
    Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
    automated match to d9ldta1
    complexed with 1e7
  3. Domain d4i9uc1: 4i9u C:1-159 [223070]
    Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
    automated match to d9ldta1
    complexed with 1e7
  4. Domain d4i9ud1: 4i9u D:1-159 [223072]
    Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
    automated match to d9ldta1
    complexed with 1e7
  5. Domain d4i9ue1: 4i9u E:1-159 [223074]
    Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
    automated match to d9ldta1
    complexed with 1e7
  6. Domain d4i9uf1: 4i9u F:1-159 [223076]
    Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
    automated match to d9ldta1
    complexed with 1e7
  7. Domain d4i9ug1: 4i9u G:1-159 [223078]
    Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
    automated match to d9ldta1
    complexed with 1e7
  8. Domain d4i9uh1: 4i9u H:1-159 [223080]
    Other proteins in same PDB: d4i9ua2, d4i9ub2, d4i9uc2, d4i9ud2, d4i9ue2, d4i9uf2, d4i9ug2, d4i9uh2
    automated match to d9ldta1
    complexed with 1e7
Toxoplasma gondii [TaxId:5811] [233099] (1 PDB entry)
- Domains for 3om9:
  1. Domain d3om9a1: 3om9 A:14-163 [233100]
    Other proteins in same PDB: d3om9a2, d3om9b2, d3om9c2, d3om9d2
    automated match to d1pzga1
    complexed with nad, oxq
  2. Domain d3om9b1: 3om9 B:14-163 [233103]
    Other proteins in same PDB: d3om9a2, d3om9b2, d3om9c2, d3om9d2
    automated match to d1pzga1
    complexed with nad, oxq
  3. Domain d3om9c1: 3om9 C:14-163 [233104]
    Other proteins in same PDB: d3om9a2, d3om9b2, d3om9c2, d3om9d2
    automated match to d1pzga1
    complexed with nad, oxq
  4. Domain d3om9d1: 3om9 D:14-163 [239569]
    Other proteins in same PDB: d3om9a2, d3om9b2, d3om9c2, d3om9d2
    automated match to d3om9a1
    complexed with nad, oxq

More info for Protein automated matches from c.2.1.5: LDH N-terminal domain-like

Timeline for Protein automated matches from c.2.1.5: LDH N-terminal domain-like:

Protein automated matches from c.2.1.5: LDH N-terminal domain-like first appeared in SCOPe 2.03
Protein automated matches from c.2.1.5: LDH N-terminal domain-like appears in SCOPe 2.04
Protein automated matches from c.2.1.5: LDH N-terminal domain-like appears in SCOPe 2.06
Protein automated matches from c.2.1.5: LDH N-terminal domain-like appears in the current release, SCOPe 2.08