PDB entry 6p9i

View 6p9i on RCSB PDB site
Description: crystal structure of human anti staphylococcus aureus antibody STAU-399 Fab
Class: immune system
Keywords: human antibody, Fab, IMMUNE SYSTEM
Deposited on 2019-06-10, released 2020-06-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-01-06, with a file datestamp of 2021-01-01.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: human anti staphylococcus aureus antibody STAU-399 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P9I (0-End)
    Domains in SCOPe 2.08: d6p9ia_
  • Chain 'B':
    Compound: human anti staphylococcus aureus antibody STAU-399 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P9I (0-End)
    Domains in SCOPe 2.08: d6p9ib1, d6p9ib2
  • Chain 'C':
    Compound: human anti staphylococcus aureus antibody STAU-399 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P9I (0-End)
    Domains in SCOPe 2.08: d6p9ic_
  • Chain 'D':
    Compound: human anti staphylococcus aureus antibody STAU-399 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P9I (0-End)
    Domains in SCOPe 2.08: d6p9id1, d6p9id2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6p9iA (A:)
qvqlvqsgaevkkpgsslkvsckvsggnlrsygiswvrqapgqglewmgviipifgtpty
aqkfqgrvtlaaddsnnivfmelsslrsedtavyycardwpsitvavdatnygmdvwgqg
tlvtvssasfkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtf
pavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

    Sequence, based on observed residues (ATOM records): (download) 
    >6p9iA (A:)
qvqlvqsgaevkkpgsslkvsckvsggnlrsygiswvrqapgqglewmgviipifgtpty
aqkfqgrvtlaaddsnnivfmelsslrsedtavyycardwpsitvavdatnygmdvwgqg
tlvtvssasfkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtf
pavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkve

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6p9iB (B:)
qsaltqprsvsgspgqsvtisctgtsndvgyydhvswyqqhpgkapkfiiydvskrpsgv
pdrfsgsksdntasltisglqaedeadyyccsfagsytyvfgtgtkvtvlgqpkanptvt
lfppsseelqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >6p9iB (B:)
qsaltqprsvsgspgqsvtisctgtsndvgyydhvswyqqhpgkapkfiiydvskrpsgv
pdrfsgsksdntasltisglqaedeadyyccsfagsytyvfgtgtkvtvlgqpkanptvt
lfppsseelqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvap

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6p9iC (C:)
qvqlvqsgaevkkpgsslkvsckvsggnlrsygiswvrqapgqglewmgviipifgtpty
aqkfqgrvtlaaddsnnivfmelsslrsedtavyycardwpsitvavdatnygmdvwgqg
tlvtvssasfkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtf
pavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

    Sequence, based on observed residues (ATOM records): (download) 
    >6p9iC (C:)
qvqlvqsgaevkkpgsslkvsckvsggnlrsygiswvrqapgqglewmgviipifgtpty
aqkfqgrvtlaaddsnnivfmelsslrsedtavyycardwpsitvavdatnygmdvwgqg
tlvtvssasfkgpsvfplapstaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkve

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6p9iD (D:)
qsaltqprsvsgspgqsvtisctgtsndvgyydhvswyqqhpgkapkfiiydvskrpsgv
pdrfsgsksdntasltisglqaedeadyyccsfagsytyvfgtgtkvtvlgqpkanptvt
lfppsseelqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >6p9iD (D:)
qsaltqprsvsgspgqsvtisctgtsndvgyydhvswyqqhpgkapkfiiydvskrpsgv
pdrfsgsksdntasltisglqaedeadyyccsfagsytyvfgtgtkvtvlgqpkanptvt
lfppsseelqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvapt