Lineage for Species: Human (Homo sapiens) [TaxId: 9606]

  1. Root: SCOPe 2.03
  2. 1253684Class a: All alpha proteins [46456] (284 folds)
  3. 1285679Fold a.211: HD-domain/PDEase-like [109603] (1 superfamily)
    multihelical; consists of two different alpha-helical bundles
  4. 1285680Superfamily a.211.1: HD-domain/PDEase-like [109604] (6 families) (S)
  5. 1285765Family a.211.1.2: PDEase [48548] (7 proteins)
    Pfam PF00233; multihelical; can be divided into three subdomains
  6. 1285825Protein Catalytic domain of cyclic nucleotide phosphodiesterase pde4d [89151] (1 species)
  7. 1285826Species Human (Homo sapiens) [TaxId:9606] [89152] (32 PDB entries)
    Uniprot Q08499 388-713

PDB entries in Species: Human (Homo sapiens) [TaxId: 9606]:

  1. Domain(s) for 1mkd:
    1. 1285910Domain d1mkda_: 1mkd A: [84982]
      complexed with mg, zar, zn
    2. 1285911Domain d1mkdb_: 1mkd B: [84983]
      complexed with mg, zar, zn
    3. 1285912Domain d1mkdc_: 1mkd C: [84984]
      complexed with mg, zar, zn
    4. 1285913Domain d1mkdd_: 1mkd D: [84985]
      complexed with mg, zar, zn
    5. 1285914Domain d1mkde_: 1mkd E: [84986]
      complexed with mg, zar, zn
    6. 1285915Domain d1mkdf_: 1mkd F: [84987]
      complexed with mg, zar, zn
    7. 1285916Domain d1mkdg_: 1mkd G: [84988]
      complexed with mg, zar, zn
    8. 1285917Domain d1mkdh_: 1mkd H: [84989]
      complexed with mg, zar, zn
    9. 1285918Domain d1mkdi_: 1mkd I: [84990]
      complexed with mg, zar, zn
    10. 1285919Domain d1mkdj_: 1mkd J: [84991]
      complexed with mg, zar, zn
    11. 1285920Domain d1mkdk_: 1mkd K: [84992]
      complexed with mg, zar, zn
    12. 1285921Domain d1mkdl_: 1mkd L: [84993]
      complexed with mg, zar, zn
  2. Domain(s) for 1oyn:
    1. 1285874Domain d1oyna_: 1oyn A: [87609]
      complexed with rol, zn
    2. 1285875Domain d1oynb_: 1oyn B: [87610]
      complexed with rol, zn
    3. 1285876Domain d1oync_: 1oyn C: [87611]
      complexed with rol, zn
    4. 1285877Domain d1oynd_: 1oyn D: [87612]
      complexed with rol, zn
  3. Domain(s) for 1ptw:
    1. 1285890Domain d1ptwa_: 1ptw A: [95106]
      complexed with amp, zn
    2. 1285891Domain d1ptwb_: 1ptw B: [95107]
      complexed with amp, zn
    3. 1285892Domain d1ptwc_: 1ptw C: [95108]
      complexed with amp, zn
    4. 1285893Domain d1ptwd_: 1ptw D: [95109]
      complexed with amp, zn
  4. Domain(s) for 1q9m:
    1. 1285886Domain d1q9ma_: 1q9m A: [96288]
      complexed with rol, zn
    2. 1285887Domain d1q9mb_: 1q9m B: [96289]
      complexed with rol, zn
    3. 1285888Domain d1q9mc_: 1q9m C: [96290]
      complexed with rol, zn
    4. 1285889Domain d1q9md_: 1q9m D: [96291]
      complexed with rol, zn
  5. Domain(s) for 1tb7:
    1. 1285837Domain d1tb7a_: 1tb7 A: [106739]
      complexed with amp, b3p, edo, mg, zn
    2. 1285838Domain d1tb7b_: 1tb7 B: [106740]
      complexed with amp, b3p, edo, mg, zn
  6. Domain(s) for 1tbb:
    1. 1285835Domain d1tbba_: 1tbb A: [106741]
      complexed with edo, mg, rol, zn
    2. 1285836Domain d1tbbb_: 1tbb B: [106742]
      complexed with edo, mg, rol, zn
  7. Domain(s) for 1xom:
    1. 1285833Domain d1xoma_: 1xom A: [115704]
      complexed with cio, edo, mg, zn
    2. 1285834Domain d1xomb_: 1xom B: [115705]
      complexed with cio, edo, mg, zn
  8. Domain(s) for 1xon:
    1. 1285847Domain d1xona_: 1xon A: [115706]
      complexed with b3p, edo, mg, pil, zn
    2. 1285848Domain d1xonb_: 1xon B: [115707]
      complexed with b3p, edo, mg, pil, zn
  9. Domain(s) for 1xoq:
    1. 1285849Domain d1xoqa_: 1xoq A: [115708]
      complexed with edo, mg, rof, zn
    2. 1285850Domain d1xoqb_: 1xoq B: [115709]
      complexed with edo, mg, rof, zn
  10. Domain(s) for 1xor:
    1. 1285831Domain d1xora_: 1xor A: [115710]
      complexed with mg, zar, zn
    2. 1285832Domain d1xorb_: 1xor B: [115711]
      complexed with mg, zar, zn
  11. Domain(s) for 1y2b:
    1. 1285829Domain d1y2ba_: 1y2b A: [122556]
      automated match to d1oyna_
      complexed with dee, edo, mg, zn
    2. 1285830Domain d1y2bb_: 1y2b B: [122557]
      automated match to d1oyna_
      complexed with dee, edo, mg, zn
  12. Domain(s) for 1y2c:
    1. 1285843Domain d1y2ca_: 1y2c A: [122558]
      automated match to d1oyna_
      complexed with 3de, edo, mg, zn
    2. 1285844Domain d1y2cb_: 1y2c B: [122559]
      automated match to d1oyna_
      complexed with 3de, edo, mg, zn
  13. Domain(s) for 1y2d:
    1. 1285841Domain d1y2da_: 1y2d A: [122560]
      automated match to d1oyna_
      complexed with 4de, b3p, edo, mg, zn
    2. 1285842Domain d1y2db_: 1y2d B: [122561]
      automated match to d1oyna_
      complexed with 4de, b3p, edo, mg, zn
  14. Domain(s) for 1y2e:
    1. 1285863Domain d1y2ea_: 1y2e A: [122562]
      automated match to d1oyna_
      complexed with 5de, edo, mg, zn
    2. 1285864Domain d1y2eb_: 1y2e B: [122563]
      automated match to d1oyna_
      complexed with 5de, edo, mg, zn
  15. Domain(s) for 1y2k:
    1. 1285827Domain d1y2ka_: 1y2k A: [122571]
      automated match to d1oyna_
      complexed with 7de, edo, mg, zn
    2. 1285828Domain d1y2kb_: 1y2k B: [122572]
      automated match to d1oyna_
      complexed with 7de, edo, mg, zn
  16. Domain(s) for 1zkn:
    1. 1285882Domain d1zkna_: 1zkn A: [125201]
      automated match to d1oyna_
      complexed with ibm, mg, zn
    2. 1285883Domain d1zknb_: 1zkn B: [125202]
      automated match to d1oyna_
      complexed with ibm, mg, zn
    3. 1285884Domain d1zknc_: 1zkn C: [125203]
      automated match to d1oyna_
      complexed with ibm, mg, zn
    4. 1285885Domain d1zknd_: 1zkn D: [125204]
      automated match to d1oyna_
      complexed with ibm, mg, zn
  17. Domain(s) for 2fm0:
    1. 1285865Domain d2fm0a_: 2fm0 A: [133752]
      automated match to d1f0ja_
      complexed with m98, mg, zn
    2. 1285866Domain d2fm0b_: 2fm0 B: [133753]
      automated match to d1f0ja_
      complexed with m98, mg, zn
    3. 1285867Domain d2fm0c_: 2fm0 C: [133754]
      automated match to d1f0ja_
      complexed with m98, mg, zn
    4. 1285868Domain d2fm0d_: 2fm0 D: [133755]
      automated match to d1f0ja_
      complexed with m98, mg, zn
  18. Domain(s) for 2fm5:
    1. 1285878Domain d2fm5a_: 2fm5 A: [133761]
      automated match to d1f0ja_
      complexed with m99, mg, zn
    2. 1285879Domain d2fm5b_: 2fm5 B: [133762]
      automated match to d1f0ja_
      complexed with m99, mg, zn
    3. 1285880Domain d2fm5c_: 2fm5 C: [133763]
      automated match to d1f0ja_
      complexed with m99, mg, zn
    4. 1285881Domain d2fm5d_: 2fm5 D: [133764]
      automated match to d1f0ja_
      complexed with m99, mg, zn
  19. Domain(s) for 2pw3:
    1. 1285839Domain d2pw3a_: 2pw3 A: [167297]
      automated match to d1mkda_
      complexed with cmp, zn
    2. 1285840Domain d2pw3b_: 2pw3 B: [167298]
      automated match to d1mkda_
      complexed with cmp, zn
  20. Domain(s) for 2qyn:
    1. 1285845Domain d2qyna_: 2qyn A: [151475]
      automated match to d1mkda_
      complexed with mg, npv, zn
    2. 1285846Domain d2qynb_: 2qyn B: [151476]
      automated match to d1mkda_
      complexed with mg, npv, zn
  21. Domain(s) for 3g4i:
    1. 1285851Domain d3g4ia_: 3g4i A: [210359]
      automated match to d1f0ja_
      complexed with d71, eoh, mg, so4, zn
    2. 1285852Domain d3g4ib_: 3g4i B: [232238]
      automated match to d3g4id_
      complexed with d71, eoh, mg, so4, zn
    3. 1285853Domain d3g4ic_: 3g4i C: [210360]
      automated match to d1f0ja_
      complexed with d71, eoh, mg, so4, zn
    4. 1285854Domain d3g4id_: 3g4i D: [210361]
      automated match to d1f0ja_
      complexed with d71, eoh, mg, so4, zn
  22. Domain(s) for 3g4k:
    1. 1285855Domain d3g4ka_: 3g4k A: [210362]
      automated match to d1f0ja_
      complexed with edo, mg, rol, so4, zn
    2. 1285856Domain d3g4kb_: 3g4k B: [232239]
      automated match to d3g4id_
      complexed with edo, mg, rol, so4, zn
    3. 1285857Domain d3g4kc_: 3g4k C: [210363]
      automated match to d1f0ja_
      complexed with edo, mg, rol, so4, zn
    4. 1285858Domain d3g4kd_: 3g4k D: [210364]
      automated match to d1f0ja_
      complexed with edo, mg, rol, so4, zn
  23. Domain(s) for 3g4l:
    1. 1285898Domain d3g4la_: 3g4l A: [210365]
      automated match to d1f0ja_
      complexed with edo, mg, rof, so4, zn
    2. 1285899Domain d3g4lb_: 3g4l B: [232240]
      automated match to d3g4id_
      complexed with edo, mg, rof, so4, zn
    3. 1285900Domain d3g4lc_: 3g4l C: [232241]
      automated match to d3g4id_
      complexed with edo, mg, rof, so4, zn
    4. 1285901Domain d3g4ld_: 3g4l D: [210366]
      automated match to d1f0ja_
      complexed with edo, mg, rof, so4, zn
  24. Domain(s) for 3g58:
    1. 1285859Domain d3g58a_: 3g58 A: [210377]
      automated match to d1f0ja_
      complexed with 988, edo, mg, so4, zn
    2. 1285860Domain d3g58b_: 3g58 B: [210378]
      automated match to d1f0ja_
      complexed with 988, edo, mg, so4, zn
    3. 1285861Domain d3g58c_: 3g58 C: [210379]
      automated match to d1f0ja_
      complexed with 988, edo, mg, so4, zn
    4. 1285862Domain d3g58d_: 3g58 D: [210380]
      automated match to d1f0ja_
      complexed with 988, edo, mg, so4, zn
  25. Domain(s) for 3iad:
    1. 1285902Domain d3iada_: 3iad A: [232567]
      automated match to d3iadc_
      complexed with 15x, epe, mg, zn
    2. 1285903Domain d3iadb_: 3iad B: [232568]
      automated match to d3iadd_
      complexed with 15x, epe, mg, zn
    3. 1285904Domain d3iadc_: 3iad C: [211553]
      automated match to d1f0ja_
      complexed with 15x, epe, mg, zn
    4. 1285905Domain d3iadd_: 3iad D: [211554]
      automated match to d1f0ja_
      complexed with 15x, epe, mg, zn
  26. Domain(s) for 3iak:
  27. Domain(s) for 3k4s:
  28. Domain(s) for 3sl3:
    1. 1285906Domain d3sl3b_: 3sl3 B: [233543]
      Other proteins in same PDB: d3sl3a_
      automated match to d2fm0a_
      complexed with dms, edo, epe, peg, po4, zn
    2. 1285907Domain d3sl3c_: 3sl3 C: [233542]
      Other proteins in same PDB: d3sl3a_
      automated match to d2fm0a_
      complexed with dms, edo, epe, peg, po4, zn
    3. 1285908Domain d3sl3d_: 3sl3 D: [233544]
      Other proteins in same PDB: d3sl3a_
      automated match to d2fm0a_
      complexed with dms, edo, epe, peg, po4, zn
  29. Domain(s) for 3sl4:
    1. 1285894Domain d3sl4a_: 3sl4 A: [216457]
      automated match to d1f0ja_
      complexed with dms, edo, epe, jn4, peg, po4, zn
    2. 1285895Domain d3sl4b_: 3sl4 B: [233546]
      automated match to d2fm0a_
      complexed with dms, edo, epe, jn4, peg, po4, zn
    3. 1285896Domain d3sl4c_: 3sl4 C: [233545]
      automated match to d2fm0a_
      complexed with dms, edo, epe, jn4, peg, po4, zn
    4. 1285897Domain d3sl4d_: 3sl4 D: [233547]
      automated match to d2fm0a_
      complexed with dms, edo, epe, jn4, peg, po4, zn
  30. Domain(s) for 3sl6:
    1. 1285922Domain d3sl6a_: 3sl6 A: [216459]
      automated match to d1f0ja_
      complexed with dms, edo, epe, jn8, zn
    2. 1285923Domain d3sl6b_: 3sl6 B: [233552]
      automated match to d2fm0a_
      complexed with dms, edo, epe, jn8, zn
    3. 1285924Domain d3sl6c_: 3sl6 C: [233553]
      automated match to d2fm0a_
      complexed with dms, edo, epe, jn8, zn
    4. 1285925Domain d3sl6d_: 3sl6 D: [233551]
      automated match to d2fm0a_
      complexed with dms, edo, epe, jn8, zn
  31. Domain(s) for 3sl8:
    1. 1285926Domain d3sl8a_: 3sl8 A: [216460]
      automated match to d1f0ja_
      complexed with dms, edo, jn7, peg, po4, zn
    2. 1285927Domain d3sl8b_: 3sl8 B: [233556]
      automated match to d2fm0a_
      complexed with dms, edo, jn7, peg, po4, zn
    3. 1285928Domain d3sl8c_: 3sl8 C: [233557]
      automated match to d2fm0a_
      complexed with dms, edo, jn7, peg, po4, zn
    4. 1285929Domain d3sl8d_: 3sl8 D: [233558]
      automated match to d2fm0a_
      complexed with dms, edo, jn7, peg, po4, zn
  32. Domain(s) for 3v9b:
    1. 1285870Domain d3v9ba_: 3v9b A: [217725]
      automated match to d1oyna_
      complexed with ihm, zn
    2. 1285871Domain d3v9bb_: 3v9b B: [217726]
      automated match to d1oyna_
      complexed with ihm, zn
    3. 1285872Domain d3v9bc_: 3v9b C: [217727]
      automated match to d1oyna_
      complexed with ihm, zn
    4. 1285873Domain d3v9bd_: 3v9b D: [217728]
      automated match to d1oyna_
      complexed with ihm, zn

More info for Species Human (Homo sapiens) [TaxId:9606] from a.211.1.2 Catalytic domain of cyclic nucleotide phosphodiesterase pde4d

Timeline for Species Human (Homo sapiens) [TaxId:9606] from a.211.1.2 Catalytic domain of cyclic nucleotide phosphodiesterase pde4d: