SCOPe 2.02: Species: Norway rat (Rattus norvegicus) [TaxId: 10116]

Lineage for Species: Norway rat (Rattus norvegicus) [TaxId: 10116]

Root: SCOPe 2.02
Class a: All alpha proteins [46456] (284 folds)
Fold a.60: SAM domain-like [47768] (16 superfamilies)
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
Superfamily a.60.12: PsbU/PolX domain-like [81585] (2 families)
contains one classic and one pseudo HhH motifs
Family a.60.12.1: DNA polymerase beta-like, second domain [81584] (3 proteins)
topological similarity to the N-terminal domain
Protein DNA polymerase beta [81579] (2 species)
Species Norway rat (Rattus norvegicus) [TaxId:10116] [81577] (18 PDB entries)

PDB entries in Species: Norway rat (Rattus norvegicus) [TaxId: 10116]:

Domain(s) for 1bpb:
- Domain d1bpba1: 1bpb A:91-148 [75811]
  Other proteins in same PDB: d1bpba2
Domain(s) for 1bpd:
- Domain d1bpda2: 1bpd A:92-148 [75813]
  Other proteins in same PDB: d1bpda1, d1bpda3
  complexed with po4
Domain(s) for 1bpe:
- Domain d1bpea2: 1bpe A:92-148 [75815]
  Other proteins in same PDB: d1bpea1, d1bpea3
  complexed with dtp
Domain(s) for 1huo:
1. Domain d1huoa3: 1huo A:92-148 [75846]
  Other proteins in same PDB: d1huoa1, d1huoa4, d1huob1, d1huob4
  protein/DNA complex; complexed with cr, tte
2. Domain d1huob3: 1huo B:92-148 [75848]
  Other proteins in same PDB: d1huoa1, d1huoa4, d1huob1, d1huob4
  protein/DNA complex; complexed with cr, tte
Domain(s) for 1huz:
1. Domain d1huza3: 1huz A:92-148 [75850]
  Other proteins in same PDB: d1huza1, d1huza4, d1huzb1, d1huzb4
  protein/DNA complex; complexed with cr, mdn
2. Domain d1huzb3: 1huz B:92-148 [75852]
  Other proteins in same PDB: d1huza1, d1huza4, d1huzb1, d1huzb4
  protein/DNA complex; complexed with cr, mdn
Domain(s) for 1jn3:
- Domain d1jn3a1: 1jn3 A:91-148 [75864]
  Other proteins in same PDB: d1jn3a2
  mutant
Domain(s) for 1nom:
- Domain d1noma1: 1nom A:91-148 [75929]
  Other proteins in same PDB: d1noma2
  complexed with mn
Domain(s) for 1rpl:
- Domain d1rpla1: 1rpl A:95-148 [75933]
  Other proteins in same PDB: d1rpla2
Domain(s) for 1zqu:
- Domain d1zqua1: 1zqu A:91-148 [75975]
  Other proteins in same PDB: d1zqua2
Domain(s) for 1zqv:
- Domain d1zqva1: 1zqv A:91-148 [75977]
  Other proteins in same PDB: d1zqva2
  complexed with ca
Domain(s) for 1zqw:
- Domain d1zqwa1: 1zqw A:91-148 [75979]
  Other proteins in same PDB: d1zqwa2
Domain(s) for 1zqx:
- Domain d1zqxa1: 1zqx A:91-148 [75981]
  Other proteins in same PDB: d1zqxa2
Domain(s) for 1zqy:
- Domain d1zqya1: 1zqy A:91-148 [75983]
  Other proteins in same PDB: d1zqya2
Domain(s) for 1zqz:
- Domain d1zqza1: 1zqz A:91-148 [75985]
  Other proteins in same PDB: d1zqza2
  complexed with mn
Domain(s) for 2bpc:
- Domain d2bpca1: 2bpc A:91-148 [75989]
  Other proteins in same PDB: d2bpca2
  complexed with mn
Domain(s) for 2bpf:
- Domain d2bpfa3: 2bpf A:92-148 [75991]
  Other proteins in same PDB: d2bpfa1, d2bpfa4
  protein/DNA complex; complexed with dct, mg
Domain(s) for 2bpg:
1. Domain d2bpga3: 2bpg A:92-148 [75993]
  Other proteins in same PDB: d2bpga1, d2bpga4, d2bpgb1, d2bpgb4
  protein/DNA complex; complexed with dct, mg
2. Domain d2bpgb3: 2bpg B:92-148 [75995]
  Other proteins in same PDB: d2bpga1, d2bpga4, d2bpgb1, d2bpgb4
  protein/DNA complex; complexed with dct, mg
Domain(s) for 2van:
- Domain d2vana1: 2van A:91-148 [152826]
  Other proteins in same PDB: d2vana2
  automatically matched to d1bpba1

More info for Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta

Timeline for Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta:

Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta first appeared in SCOP 1.63, called Species Rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta
Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta appears in SCOPe 2.01
Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta appears in SCOPe 2.03
Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta appears in the current release, SCOPe 2.08