SCOP 1.63: Species: Rat (Rattus norvegicus)

Lineage for Species: Rat (Rattus norvegicus)

Root: SCOP 1.63
Class a: All alpha proteins [46456] (171 folds)
Fold a.60: SAM domain-like [47768] (13 superfamilies)
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
Superfamily a.60.12: DNA polymerase beta-like, second domain [81585] (1 family)
contains one classic and one pseudo HhH motifs
Family a.60.12.1: DNA polymerase beta-like, second domain [81584] (2 proteins)
topological similarity to the N-terminal domain
Protein DNA polymerase beta [81579] (2 species)
Species Rat (Rattus norvegicus) [TaxId:10116] [81577] (17 PDB entries)

PDB entries in Species: Rat (Rattus norvegicus):

Domain(s) for 1bpb:
- Domain d1bpb_1: 1bpb 91-148 [75811]
  Other proteins in same PDB: d1bpb_2
Domain(s) for 1bpd:
- Domain d1bpd_3: 1bpd 92-148 [75813]
  Other proteins in same PDB: d1bpd_1, d1bpd_4
  complexed with po4
Domain(s) for 1bpe:
- Domain d1bpe_3: 1bpe 92-148 [75815]
  Other proteins in same PDB: d1bpe_1, d1bpe_4
  complexed with dtp
Domain(s) for 1huo:
1. Domain d1huoa3: 1huo A:92-148 [75846]
  Other proteins in same PDB: d1huoa1, d1huoa4, d1huob1, d1huob4
2. Domain d1huob3: 1huo B:92-148 [75848]
  Other proteins in same PDB: d1huoa1, d1huoa4, d1huob1, d1huob4
  complexed with cr, tte
Domain(s) for 1huz:
1. Domain d1huza3: 1huz A:92-148 [75850]
  Other proteins in same PDB: d1huza1, d1huza4, d1huzb1, d1huzb4
2. Domain d1huzb3: 1huz B:92-148 [75852]
  Other proteins in same PDB: d1huza1, d1huza4, d1huzb1, d1huzb4
  complexed with cr, mdn
Domain(s) for 1jn3:
- Domain d1jn3a1: 1jn3 A:91-148 [75864]
  Other proteins in same PDB: d1jn3a2
  mutant
Domain(s) for 1nom:
- Domain d1nom_1: 1nom 91-148 [75929]
  Other proteins in same PDB: d1nom_2
  complexed with mn
Domain(s) for 1rpl:
- Domain d1rpl_1: 1rpl 95-148 [75933]
  Other proteins in same PDB: d1rpl_2
Domain(s) for 1zqu:
- Domain d1zqu_1: 1zqu 91-148 [75975]
  Other proteins in same PDB: d1zqu_2
Domain(s) for 1zqv:
- Domain d1zqv_1: 1zqv 91-148 [75977]
  Other proteins in same PDB: d1zqv_2
  complexed with ca
Domain(s) for 1zqw:
- Domain d1zqw_1: 1zqw 91-148 [75979]
  Other proteins in same PDB: d1zqw_2
Domain(s) for 1zqx:
- Domain d1zqx_1: 1zqx 91-148 [75981]
  Other proteins in same PDB: d1zqx_2
Domain(s) for 1zqy:
- Domain d1zqy_1: 1zqy 91-148 [75983]
  Other proteins in same PDB: d1zqy_2
Domain(s) for 1zqz:
- Domain d1zqz_1: 1zqz 91-148 [75985]
  Other proteins in same PDB: d1zqz_2
  complexed with mn
Domain(s) for 2bpc:
- Domain d2bpc_1: 2bpc 91-148 [75989]
  Other proteins in same PDB: d2bpc_2
  complexed with mn
Domain(s) for 2bpf:
- Domain d2bpfa3: 2bpf A:92-148 [75991]
  Other proteins in same PDB: d2bpfa1, d2bpfa4
  protein/DNA complex; complexed with dct, mg
Domain(s) for 2bpg:
1. Domain d2bpga3: 2bpg A:92-148 [75993]
  Other proteins in same PDB: d2bpga1, d2bpga4, d2bpgb1, d2bpgb4
2. Domain d2bpgb3: 2bpg B:92-148 [75995]
  Other proteins in same PDB: d2bpga1, d2bpga4, d2bpgb1, d2bpgb4
  protein/DNA complex; complexed with dct, mg

More info for Species Rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta

Timeline for Species Rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta:

Species Rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta is new in SCOP 1.63
Species Rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta appears in SCOP 1.65
Species Rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta appears in the current release, SCOPe 2.08, called Species Norway rat (Rattus norvegicus) [TaxId:10116] from a.60.12.1 DNA polymerase beta