Lineage for Protein: Pleiotropic translational regulator Hfq

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1786638Fold b.38: Sm-like fold [50181] (5 superfamilies)
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. 1786639Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families) (S)
  5. 1786929Family b.38.1.2: Pleiotropic translational regulator Hfq [74939] (2 proteins)
    forms homohexameric ring structures
  6. 1786930Protein Pleiotropic translational regulator Hfq [74940] (3 species)

Species:

  1. 1786931Escherichia coli [TaxId:562] [89319] (1 PDB entry)
  2. 1786938Pseudomonas aeruginosa [TaxId:287] [141293] (11 PDB entries)
    Uniprot Q9HUM0 6-71
    1. Domains for 1u1s:
      1. 1786945Domain d1u1sa1: 1u1s A:6-71 [119451]
      2. 1786946Domain d1u1sb_: 1u1s B: [119452]
        automated match to d1hk9d_
      3. 1786947Domain d1u1sc_: 1u1s C: [119453]
        automated match to d1hk9d_
      4. 1786948Domain d1u1sd_: 1u1s D: [119454]
        automated match to d1hk9d_
      5. 1786949Domain d1u1se_: 1u1s E: [119455]
        automated match to d1hk9d_
      6. 1786950Domain d1u1sf_: 1u1s F: [119456]
        automated match to d1hk9d_
    2. Domains for 1u1t:
      1. 1786957Domain d1u1ta_: 1u1t A: [119457]
        automated match to d1hk9d_
      2. 1786958Domain d1u1tb_: 1u1t B: [119458]
        automated match to d1hk9d_
      3. 1786959Domain d1u1tc_: 1u1t C: [119459]
        automated match to d1hk9d_
      4. 1786960Domain d1u1td_: 1u1t D: [119460]
        automated match to d1hk9d_
      5. 1786961Domain d1u1te_: 1u1t E: [119461]
        automated match to d1hk9d_
      6. 1786962Domain d1u1tf_: 1u1t F: [119462]
        automated match to d1hk9d_
    3. Domains for 3inz:
      1. 1786939Domain d3inza_: 3inz A: [178468]
        automated match to d1u1sa1
        complexed with cd, cl, na
      2. 1786940Domain d3inzb_: 3inz B: [178469]
        automated match to d1u1sa1
        complexed with cd, cl, na
      3. 1786941Domain d3inzc_: 3inz C: [178470]
        automated match to d1u1sa1
        complexed with cd, cl, na
      4. 1786942Domain d3inzd_: 3inz D: [178471]
        automated match to d1u1sa1
        complexed with cd, cl, na
      5. 1786943Domain d3inze_: 3inz E: [178472]
        automated match to d1u1sa1
        complexed with cd, cl, na
      6. 1786944Domain d3inzf_: 3inz F: [178473]
        automated match to d1u1sa1
        complexed with cd, cl, na
    4. Domains for 3m4g:
      1. 1786982Domain d3m4ga_: 3m4g A: [180842]
        automated match to d1u1sa1
        complexed with zn
      2. 1786983Domain d3m4gb_: 3m4g B: [180843]
        automated match to d1u1sa1
        complexed with zn
      3. 1786984Domain d3m4gc_: 3m4g C: [180844]
        automated match to d1u1sa1
        complexed with zn
      4. 1786985Domain d3m4gd_: 3m4g D: [180845]
        automated match to d1u1sa1
        complexed with zn
      5. 1786986Domain d3m4ge_: 3m4g E: [180846]
        automated match to d1u1sa1
        complexed with zn
      6. 1786987Domain d3m4gf_: 3m4g F: [180847]
        automated match to d1u1sa1
        complexed with zn
      7. 1786988Domain d3m4gg_: 3m4g G: [180848]
        automated match to d1u1sa1
        complexed with zn
      8. 1786989Domain d3m4gh_: 3m4g H: [180849]
        automated match to d1u1sa1
        complexed with zn
      9. 1786990Domain d3m4gi_: 3m4g I: [180850]
        automated match to d1u1sa1
        complexed with zn
      10. 1786991Domain d3m4gj_: 3m4g J: [180851]
        automated match to d1u1sa1
        complexed with zn
      11. 1786992Domain d3m4gk_: 3m4g K: [180852]
        automated match to d1u1sa1
        complexed with zn
      12. 1786993Domain d3m4gl_: 3m4g L: [180853]
        automated match to d1u1sa1
        complexed with zn
    5. Domains for 3qui:
      1. 1786976Domain d3quia_: 3qui A: [200387]
        automated match to d1u1te_
        protein/RNA complex; complexed with ade, adp, anp, peg
      2. 1786977Domain d3quib_: 3qui B: [200388]
        automated match to d1u1te_
        protein/RNA complex; complexed with ade, adp, anp, peg
      3. 1786978Domain d3quic_: 3qui C: [200389]
        automated match to d1u1te_
        protein/RNA complex; complexed with ade, adp, anp, peg
      4. 1786979Domain d3quid_: 3qui D: [200390]
        automated match to d1u1sa1
        protein/RNA complex; complexed with ade, adp, anp, peg
      5. 1786980Domain d3quie_: 3qui E: [200391]
        automated match to d1u1te_
        protein/RNA complex; complexed with ade, adp, anp, peg
      6. 1786981Domain d3quif_: 3qui F: [196057]
        automated match to d3inzf_
        protein/RNA complex; complexed with ade, adp, anp, peg
    6. Domains for 4j5y:
      1. 1786970Domain d4j5ya_: 4j5y A: [223563]
        automated match to d1u1te_
        protein/RNA complex; complexed with atp, na, peg
      2. 1786971Domain d4j5yb_: 4j5y B: [223564]
        automated match to d1u1te_
        protein/RNA complex; complexed with atp, na, peg
      3. 1786972Domain d4j5yc_: 4j5y C: [223565]
        automated match to d1u1te_
        protein/RNA complex; complexed with atp, na, peg
      4. 1786973Domain d4j5yd_: 4j5y D: [223566]
        automated match to d1u1te_
        protein/RNA complex; complexed with atp, na, peg
      5. 1786974Domain d4j5ye_: 4j5y E: [223567]
        automated match to d1u1te_
        protein/RNA complex; complexed with atp, na, peg
      6. 1786975Domain d4j5yf_: 4j5y F: [223568]
        automated match to d1u1te_
        protein/RNA complex; complexed with atp, na, peg
    7. Domains for 4j6w:
      1. 1786951Domain d4j6wa_: 4j6w A: [223598]
        automated match to d1u1te_
        protein/RNA complex; complexed with c, cdp, cl, ctp, mg, na, p6g
      2. 1786952Domain d4j6wb_: 4j6w B: [223599]
        automated match to d1u1sb_
        protein/RNA complex; complexed with c, cdp, cl, ctp, mg, na, p6g
      3. 1786953Domain d4j6wc_: 4j6w C: [223600]
        automated match to d1u1sb_
        protein/RNA complex; complexed with c, cdp, cl, ctp, mg, na, p6g
      4. 1786954Domain d4j6wd_: 4j6w D: [223601]
        automated match to d1u1sb_
        protein/RNA complex; complexed with c, cdp, cl, ctp, mg, na, p6g
      5. 1786955Domain d4j6we_: 4j6w E: [223602]
        automated match to d1u1se_
        protein/RNA complex; complexed with c, cdp, cl, ctp, mg, na, p6g
      6. 1786956Domain d4j6wf_: 4j6w F: [223603]
        automated match to d1u1te_
        protein/RNA complex; complexed with c, cdp, cl, ctp, mg, na, p6g
    8. Domains for 4j6x:
      1. 1786994Domain d4j6xa_: 4j6x A: [223604]
        automated match to d1u1sa1
        protein/RNA complex; complexed with utp
      2. 1786995Domain d4j6xb_: 4j6x B: [223605]
        automated match to d1u1te_
        protein/RNA complex; complexed with utp
      3. 1786996Domain d4j6xc_: 4j6x C: [223606]
        automated match to d1u1sa1
        protein/RNA complex; complexed with utp
      4. 1786997Domain d4j6xd_: 4j6x D: [223607]
        automated match to d1u1sb_
        protein/RNA complex; complexed with utp
      5. 1786998Domain d4j6xe_: 4j6x E: [223608]
        automated match to d1u1te_
        protein/RNA complex; complexed with utp
      6. 1786999Domain d4j6xf_: 4j6x F: [223609]
        automated match to d1u1te_
        protein/RNA complex; complexed with utp
    9. Domains for 4j6y:
      1. 1786964Domain d4j6ya_: 4j6y A: [223610]
        automated match to d1u1sa1
        complexed with cd
      2. 1786965Domain d4j6yb_: 4j6y B: [223611]
        automated match to d1u1sb_
        complexed with cd
      3. 1786966Domain d4j6yc_: 4j6y C: [223612]
        automated match to d1u1te_
        complexed with cd
      4. 1786967Domain d4j6yd_: 4j6y D: [223613]
        automated match to d1u1sa1
        complexed with cd
      5. 1786968Domain d4j6ye_: 4j6y E: [223614]
        automated match to d1u1te_
        complexed with cd
      6. 1786969Domain d4j6yf_: 4j6y F: [223615]
        automated match to d1u1te_
        complexed with cd
    10. Domains for 4mmk:
      1. 1787000Domain d4mmka_: 4mmk A: [257945]
        automated match to d3quia_
        complexed with k, na, so4, zn
      2. 1787001Domain d4mmkb_: 4mmk B: [257946]
        automated match to d3quia_
        complexed with k, na, so4, zn
      3. 1787002Domain d4mmkc_: 4mmk C: [263039]
        automated match to d3quia_
        complexed with k, na, so4, zn
      4. 1787003Domain d4mmkd_: 4mmk D: [263040]
        automated match to d3quia_
        complexed with k, na, so4, zn
      5. 1787004Domain d4mmke_: 4mmk E: [263041]
        automated match to d3quia_
        complexed with k, na, so4, zn
      6. 1787005Domain d4mmkf_: 4mmk F: [263042]
        automated match to d3quia_
        complexed with k, na, so4, zn
      7. 1787006Domain d4mmkg_: 4mmk G: [263043]
        automated match to d3quia_
        complexed with k, na, so4, zn
      8. 1787007Domain d4mmkh_: 4mmk H: [263044]
        automated match to d3quia_
        complexed with k, na, so4, zn
      9. 1787008Domain d4mmki_: 4mmk I: [263045]
        automated match to d3quia_
        complexed with k, na, so4, zn
      10. 1787009Domain d4mmkj_: 4mmk J: [263046]
        automated match to d3quia_
        complexed with k, na, so4, zn
      11. 1787010Domain d4mmkk_: 4mmk K: [263047]
        automated match to d3quia_
        complexed with k, na, so4, zn
      12. 1787011Domain d4mmkl_: 4mmk L: [263048]
        automated match to d3quia_
        complexed with k, na, so4, zn
    11. Domain for 4mml:
  3. 1787012Staphylococcus aureus [TaxId:1280] [74941] (3 PDB entries)
    1. Domains for 1kq1:
      1. 1787013Domain d1kq1a_: 1kq1 A: [72848]
        complexed with acy
      2. 1787014Domain d1kq1b_: 1kq1 B: [72849]
        complexed with acy
      3. 1787015Domain d1kq1h_: 1kq1 H: [72850]
        complexed with acy
      4. 1787016Domain d1kq1i_: 1kq1 I: [72851]
        complexed with acy
      5. 1787017Domain d1kq1k_: 1kq1 K: [72852]
        complexed with acy
      6. 1787018Domain d1kq1m_: 1kq1 M: [72853]
        complexed with acy
      7. 1787019Domain d1kq1n_: 1kq1 N: [72854]
        complexed with acy
      8. 1787020Domain d1kq1r_: 1kq1 R: [72855]
        complexed with acy
      9. 1787021Domain d1kq1s_: 1kq1 S: [72856]
        complexed with acy
      10. 1787022Domain d1kq1t_: 1kq1 T: [72857]
        complexed with acy
      11. 1787023Domain d1kq1w_: 1kq1 W: [72858]
        complexed with acy
      12. 1787024Domain d1kq1y_: 1kq1 Y: [72859]
        complexed with acy
    2. Domains for 1kq2:
      1. 1787039Domain d1kq2a_: 1kq2 A: [72860]
        protein/RNA complex
      2. 1787040Domain d1kq2b_: 1kq2 B: [72861]
        protein/RNA complex
      3. 1787041Domain d1kq2h_: 1kq2 H: [72862]
        protein/RNA complex
      4. 1787042Domain d1kq2i_: 1kq2 I: [72863]
        protein/RNA complex
      5. 1787043Domain d1kq2k_: 1kq2 K: [72864]
        protein/RNA complex
      6. 1787044Domain d1kq2m_: 1kq2 M: [72865]
        protein/RNA complex
    3. Domains for 3qsu:
      1. 1787025Domain d3qsua_: 3qsu A: [197430]
        automated match to d1kq1h_
        protein/RNA complex; complexed with zn
      2. 1787026Domain d3qsub_: 3qsu B: [193522]
        automated match to d1kq1h_
        protein/RNA complex; complexed with zn
      3. 1787027Domain d3qsuc_: 3qsu C: [200375]
        automated match to d1kq1a_
        protein/RNA complex; complexed with zn
      4. 1787028Domain d3qsud_: 3qsu D: [200376]
        automated match to d1kq1h_
        protein/RNA complex; complexed with zn
      5. 1787029Domain d3qsue_: 3qsu E: [200377]
        automated match to d1kq1h_
        protein/RNA complex; complexed with zn
      6. 1787030Domain d3qsuf_: 3qsu F: [200378]
        automated match to d1kq1a_
        protein/RNA complex; complexed with zn
      7. 1787031Domain d3qsug_: 3qsu G: [200379]
        automated match to d1kq1b_
        protein/RNA complex; complexed with zn
      8. 1787032Domain d3qsuh_: 3qsu H: [200380]
        automated match to d1kq1b_
        protein/RNA complex; complexed with zn
      9. 1787033Domain d3qsui_: 3qsu I: [200381]
        automated match to d1kq1a_
        protein/RNA complex; complexed with zn
      10. 1787034Domain d3qsuj_: 3qsu J: [200382]
        automated match to d1kq1b_
        protein/RNA complex; complexed with zn
      11. 1787035Domain d3qsuk_: 3qsu K: [200383]
        automated match to d1kq1b_
        protein/RNA complex; complexed with zn
      12. 1787036Domain d3qsum_: 3qsu M: [200384]
        automated match to d1kq1h_
        protein/RNA complex; complexed with zn
      13. 1787037Domain d3qsun_: 3qsu N: [200385]
        automated match to d1kq1b_
        protein/RNA complex; complexed with zn
      14. 1787038Domain d3qsus_: 3qsu S: [200386]
        automated match to d1kq1b_
        protein/RNA complex; complexed with zn

More info for Protein Pleiotropic translational regulator Hfq from b.38.1.2: Pleiotropic translational regulator Hfq

Timeline for Protein Pleiotropic translational regulator Hfq from b.38.1.2: Pleiotropic translational regulator Hfq: