Lineage for Family c.37.1.11: RecA protein-like (ATPase-domain)

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families) (S)
    division into families based on beta-sheet topologies
  5. Family c.37.1.11: RecA protein-like (ATPase-domain) [52670] (22 proteins)
    core: mixed beta-sheet of 8 strands, order 32451678; strand 7 is antiparallel to the rest

Proteins:

  1. A1 ATP synthase A subunit, central domain [310704] (2 species)
    1. Species Pyrococcus horikoshii OT3 [TaxId:70601] [310931] (1 PDB entry)
    2. Species Pyrococcus horikoshii [TaxId:53953] [310932] (1 PDB entry)
  2. Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU [52682] (1 species)
    lacks the last strand 8
  3. ATP:corrinoid adenosyltransferase CobA [52684] (1 species)
    lacks the two last strands
  4. Bacterial conjugative coupling protein TrwB [69492] (1 species)
  5. Cancer-related NTPase, C1orf57 [159566] (1 species)
    member of Pfam PF03266; DUF265
  6. Central domain of alpha subunit of F1 ATP synthase [88774] (5 species)
    1. Species Bacillus sp., strain ps3 [TaxId:1409] [88777] (1 PDB entry)
    2. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [310928] (2 PDB entries)
    3. Species Cow (Bos taurus) [TaxId:9913] [88775] (15 PDB entries)
      Uniprot P19483
    4. Species Norway rat (Rattus norvegicus) [TaxId:10116] [88776] (1 PDB entry)
    5. Species Spinach (Spinacia oleracea), chloroplast [TaxId:3562] [88778] (2 PDB entries)
  7. Central domain of beta subunit of F1 ATP synthase [88779] (5 species)
    1. Species Bacillus sp., strain ps3 [TaxId:1409] [88782] (1 PDB entry)
    2. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [310897] (6 PDB entries)
    3. Species Cow (Bos taurus) [TaxId:9913] [88780] (18 PDB entries)
      Uniprot P00829
    4. Species Norway rat (Rattus norvegicus) [TaxId:10116] [88781] (1 PDB entry)
    5. Species Spinach (Spinacia oleracea), chloroplast [TaxId:3562] [88783] (2 PDB entries)
  8. Circadian clock protein KaiC [110558] (1 species)
    duplication: contains two copies of this domain
  9. DNA repair protein Rad51, catalytic domain [82412] (7 species)
    1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [110554] (2 PDB entries)
      Uniprot P25454 81-395
    2. Species Human (Homo sapiens) [TaxId:9606] [82413] (1 PDB entry)
    3. Species Methanococcus voltae [TaxId:2188] [110555] (14 PDB entries)
      Uniprot O73948
    4. Species Methanococcus voltae [TaxId:523842] [226807] (1 PDB entry)
    5. Species Pyrococcus furiosus [TaxId:2261] [102377] (1 PDB entry)
    6. Species Sulfolobus solfataricus [TaxId:2287] [225209] (2 PDB entries)
    7. Species Sulfolobus solfataricus [TaxId:273057] [225378] (1 PDB entry)
  10. Extracellular secretion NTPase EpsE [102375] (1 species)
    type II/IV secretion system protein; overall structure is similar to HP0525
  11. Gene 4 protein (g4p, DNA primase), helicase domain [52674] (1 species)
  12. Hexameric replicative helicase repA [52676] (1 species)
  13. Hexameric traffic ATPase, HP0525 [52719] (1 species)
    type II/IV secretion system protein; includes N-terminal alpha+beta domain of a profilin-like topology
  14. Hypothetical kinase-like protein Aq_1292 [142301] (1 species)
    member of Pfam PF03266 (DUF265)
  15. Meiotic recombination protein DMC1/LIM15 homolog [110556] (1 species)
  16. NTPase P4 [117541] (1 species)
    contains extra N-terminal subdomain (~100 residues): [contains pseudo beta-barrel]
  17. RecA protein, ATPase-domain [52671] (6 species)
    C-terminal domain is alpha+beta
    1. Species Deinococcus radiodurans [TaxId:1299] [117540] (1 PDB entry)
      Uniprot P42443 15-341
    2. Species Escherichia coli [TaxId:562] [52672] (7 PDB entries)
      Uniprot P0A7G6 P03017
    3. Species Escherichia coli [TaxId:83333] [274784] (1 PDB entry)
    4. Species Mycobacterium smegmatis [TaxId:1772] [89675] (4 PDB entries)
    5. Species Mycobacterium smegmatis [TaxId:246196] [224887] (2 PDB entries)
    6. Species Mycobacterium tuberculosis [TaxId:1773] [52673] (6 PDB entries)
  18. Transcription termination factor Rho, ATPase domain [89676] (1 species)
  19. V1 ATP synthase A subunit, central domain [310703] (2 species)
    1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [310930] (1 PDB entry)
    2. Species Thermus thermophilus HB8 [TaxId:300852] [310929] (2 PDB entries)
  20. V1 ATP synthase B subunit, central domain [310705] (2 species)
    1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [310934] (1 PDB entry)
    2. Species Thermus thermophilus HB8 [TaxId:300852] [310933] (2 PDB entries)
  21. automated matches [190393] (12 species)
    not a true protein
    1. Species Bacillus sp. [TaxId:90973] [255562] (1 PDB entry)
    2. Species Caldalkalibacillus thermarum [TaxId:986075] [322910] (2 PDB entries)
    3. Species Cow (Bos taurus) [TaxId:9913] [255271] (6 PDB entries)
    4. Species Helicobacter pylori [TaxId:210] [359660] (1 PDB entry)
    5. Species Mycobacterium smegmatis [TaxId:1772] [255524] (3 PDB entries)
    6. Species Mycobacterium smegmatis [TaxId:246196] [225584] (8 PDB entries)
    7. Species Mycobacterium tuberculosis [TaxId:1773] [270301] (16 PDB entries)
    8. Species Norway rat (Rattus norvegicus) [TaxId:10116] [255163] (1 PDB entry)
    9. Species Pseudomonas phage [TaxId:161736] [188308] (6 PDB entries)
    10. Species Salmonella enterica [TaxId:99287] [194072] (1 PDB entry)
    11. Species Spinach (Spinacia oleracea) [TaxId:3562] [352463] (2 PDB entries)
    12. Species Toxoplasma gondii [TaxId:507601] [397690] (1 PDB entry)
  22. Central domain of flagellar type III ATPase FliI [419199] (1 species)

More info for Family c.37.1.11: RecA protein-like (ATPase-domain)

Timeline for Family c.37.1.11: RecA protein-like (ATPase-domain):