SCOPe 2.07: Family c.37.1.11: RecA protein-like (ATPase-domain)

Lineage for Family c.37.1.11: RecA protein-like (ATPase-domain)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.11: RecA protein-like (ATPase-domain) [52670] (21 proteins)
   core: mixed beta-sheet of 8 strands, order 32451678; strand 7 is antiparallel to the rest

Proteins:

1. A1 ATP synthase A subunit, central domain [310704] (2 species)

   1. Species Pyrococcus horikoshii OT3 [TaxId:70601] [310931] (1 PDB entry)

   2. Species Pyrococcus horikoshii [TaxId:53953] [310932] (1 PDB entry)

2. Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU [52682] (1 species)
   lacks the last strand 8

   • Species Salmonella typhimurium [TaxId:90371] [52683] (2 PDB entries)

3. ATP:corrinoid adenosyltransferase CobA [52684] (1 species)
   lacks the two last strands

   • Species Salmonella typhimurium [TaxId:90371] [52685] (3 PDB entries)

4. Bacterial conjugative coupling protein TrwB [69492] (1 species)

   • Species Escherichia coli [TaxId:562] [69493] (5 PDB entries)

5. Cancer-related NTPase, C1orf57 [159566] (1 species)
   member of Pfam PF03266; DUF265

   • Species Human (Homo sapiens) [TaxId:9606] [159567] (1 PDB entry)
     Uniprot Q5TDE9 2-190

6. Central domain of alpha subunit of F1 ATP synthase [88774] (5 species)

   1. Species Bacillus sp., strain ps3 [TaxId:1409] [88777] (1 PDB entry)

   2. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [310928] (2 PDB entries)

   3. Species Cow (Bos taurus) [TaxId:9913] [88775] (15 PDB entries)
      Uniprot P19483

   4. Species Norway rat (Rattus norvegicus) [TaxId:10116] [88776] (1 PDB entry)

   5. Species Spinach (Spinacia oleracea), chloroplast [TaxId:3562] [88778] (2 PDB entries)

7. Central domain of beta subunit of F1 ATP synthase [88779] (5 species)

   1. Species Bacillus sp., strain ps3 [TaxId:1409] [88782] (1 PDB entry)

   2. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [310897] (6 PDB entries)

   3. Species Cow (Bos taurus) [TaxId:9913] [88780] (18 PDB entries)
      Uniprot P00829

   4. Species Norway rat (Rattus norvegicus) [TaxId:10116] [88781] (1 PDB entry)

   5. Species Spinach (Spinacia oleracea), chloroplast [TaxId:3562] [88783] (2 PDB entries)

8. Circadian clock protein KaiC [110558] (1 species)
   duplication: contains two copies of this domain

   • Species Synechococcus elongatus PCC 7942 [TaxId:1140] [110559] (3 PDB entries)
     Uniprot Q79PF4 14-497

9. DNA repair protein Rad51, catalytic domain [82412] (7 species)

   1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [110554] (2 PDB entries)
      Uniprot P25454 81-395

   2. Species Human (Homo sapiens) [TaxId:9606] [82413] (1 PDB entry)

   3. Species Methanococcus voltae [TaxId:2188] [110555] (14 PDB entries)
      Uniprot O73948

   4. Species Methanococcus voltae [TaxId:523842] [226807] (1 PDB entry)

   5. Species Pyrococcus furiosus [TaxId:2261] [102377] (1 PDB entry)

   6. Species Sulfolobus solfataricus [TaxId:2287] [225209] (2 PDB entries)

   7. Species Sulfolobus solfataricus [TaxId:273057] [225378] (1 PDB entry)

10. Extracellular secretion NTPase EpsE [102375] (1 species)
    type II/IV secretion system protein; overall structure is similar to HP0525

    • Species Vibrio cholerae [TaxId:666] [102376] (2 PDB entries)

11. Gene 4 protein (g4p, DNA primase), helicase domain [52674] (1 species)

    • Species Bacteriophage T7 [TaxId:10760] [52675] (7 PDB entries)

12. Hexameric replicative helicase repA [52676] (1 species)

    • Species Escherichia coli [TaxId:562] [52677] (3 PDB entries)

13. Hexameric traffic ATPase, HP0525 [52719] (1 species)
    type II/IV secretion system protein; includes N-terminal alpha+beta domain of a profilin-like topology

    • Species Helicobacter pylori [TaxId:210] [52720] (5 PDB entries)

14. Hypothetical kinase-like protein Aq_1292 [142301] (1 species)
    member of Pfam PF03266 (DUF265)

    • Species Aquifex aeolicus [TaxId:63363] [142302] (1 PDB entry)
      Uniprot O67322 1-178

15. Meiotic recombination protein DMC1/LIM15 homolog [110556] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [110557] (2 PDB entries)
      Uniprot Q14565

16. NTPase P4 [117541] (1 species)
    contains extra N-terminal subdomain (~100 residues): [contains pseudo beta-barrel]

    • Species Bacteriophage phi-12 [TaxId:161736] [117542] (10 PDB entries)
      Uniprot Q94M05

17. RecA protein, ATPase-domain [52671] (6 species)
    C-terminal domain is alpha+beta

    1. Species Deinococcus radiodurans [TaxId:1299] [117540] (1 PDB entry)
       Uniprot P42443 15-341

    2. Species Escherichia coli [TaxId:562] [52672] (7 PDB entries)
       Uniprot P0A7G6 P03017

    3. Species Escherichia coli [TaxId:83333] [274784] (1 PDB entry)

    4. Species Mycobacterium smegmatis [TaxId:1772] [89675] (4 PDB entries)

    5. Species Mycobacterium smegmatis [TaxId:246196] [224887] (2 PDB entries)

    6. Species Mycobacterium tuberculosis [TaxId:1773] [52673] (6 PDB entries)

18. Transcription termination factor Rho, ATPase domain [89676] (1 species)

    • Species Escherichia coli [TaxId:562] [89677] (5 PDB entries)
      Uniprot P03002

19. V1 ATP synthase A subunit, central domain [310703] (2 species)

    1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [310930] (1 PDB entry)

    2. Species Thermus thermophilus HB8 [TaxId:300852] [310929] (2 PDB entries)

20. V1 ATP synthase B subunit, central domain [310705] (2 species)

    1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [310934] (1 PDB entry)

    2. Species Thermus thermophilus HB8 [TaxId:300852] [310933] (2 PDB entries)

21. automated matches [190393] (13 species)
    not a true protein

    1. Species Bacillus sp. [TaxId:90973] [255562] (1 PDB entry)

    2. Species Caldalkalibacillus thermarum [TaxId:986075] [322910] (2 PDB entries)

    3. Species Cow (Bos taurus) [TaxId:9913] [255271] (6 PDB entries)

    4. Species Helicobacter pylori [TaxId:210] [359660] (1 PDB entry)

    5. Species Human (Homo sapiens) [TaxId:9606] [196788] (1 PDB entry)

    6. Species Mycobacterium smegmatis [TaxId:1772] [255524] (3 PDB entries)

    7. Species Mycobacterium smegmatis [TaxId:246196] [225584] (8 PDB entries)

    8. Species Mycobacterium tuberculosis [TaxId:1773] [270301] (16 PDB entries)

    9. Species Norway rat (Rattus norvegicus) [TaxId:10116] [255163] (1 PDB entry)

    10. Species Pseudomonas phage [TaxId:161736] [188308] (6 PDB entries)

    11. Species Salmonella enterica [TaxId:99287] [194072] (1 PDB entry)

    12. Species Spinacia oleracea [TaxId:3562] [352463] (2 PDB entries)

    13. Species Toxoplasma gondii [TaxId:507601] [397690] (1 PDB entry)

More info for Family c.37.1.11: RecA protein-like (ATPase-domain)

Timeline for Family c.37.1.11: RecA protein-like (ATPase-domain):

• Family c.37.1.11: RecA protein-like (ATPase-domain) first appeared (with stable ids) in SCOP 1.55
  
• Family c.37.1.11: RecA protein-like (ATPase-domain) appears in SCOPe 2.06
  
• Family c.37.1.11: RecA protein-like (ATPase-domain) appears in the current release, SCOPe 2.08