SCOPe 2.08: Domain d6ewbd1: 6ewb D:225-530

Lineage for d6ewbd1 (6ewb D:225-530)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.0: automated matches [191569] (1 protein)
   not a true family

6. Protein automated matches [190988] (51 species)
   not a true protein

7. Species Norovirus hu/gii.4/sydney/nsw0514/2012/au [TaxId:1241973] [419916] (10 PDB entries)

8. Domain d6ewbd1: 6ewb D:225-530 [411096]
   Other proteins in same PDB: d6ewba2, d6ewbc2, d6ewbd2, d6ewbe1, d6ewbe2, d6ewbf1, d6ewbf2, d6ewbg1, d6ewbg2, d6ewbh1, d6ewbh2, d6ewbi1, d6ewbi2, d6ewbj1, d6ewbj2, d6ewbk1, d6ewbk2, d6ewbl1, d6ewbl2
   automated match to d5or7a_
   complexed with edo

Details for d6ewbd1

PDB Entry: 6ewb, 2.78 Å

PDB Description: crystal structure of gii.4 unsw 2012 p domain in complex with fab 10e9

PDB Compounds: (D:) vp1

SCOPe Domain Sequences for d6ewbd1:

Sequence; same for both SEQRES and ATOM records:

>d6ewbd1 b.121.4.0 (D:225-530) automated matches {Norovirus hu/gii.4/sydney/nsw0514/2012/au [TaxId: 1241973]}
kpfsvpvltveemtnsrfpipleklftgpssafvvqpqngrcttdgvllgttqlspvnic
tfrgdvthitgsrnytmnlasqnwndydpteeipaplgtpdfvgkiqgvltqttrtdgst
rghkatvytgsadfapklgrvqfetdtdrdfeanqntkftpvgviqdggtthrnepqqwv
lpsysgrnthnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqyfyqe
aapaqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswvnqf
ytlapm

Timeline for d6ewbd1:

• d6ewbd1 is new in SCOPe 2.08-stable