Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2075626Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2076195Family b.121.4.0: automated matches [191569] (1 protein)
    not a true family
  6. 2076196Protein automated matches [190988] (13 species)
    not a true protein

Species:

  1. 2076197Coxsackievirus a16 (strain tainan/5079/98) [TaxId:231417] [277502] (1 PDB entry)
  2. 2076199Coxsackievirus a16 [TaxId:31704] [276271] (3 PDB entries)
    1. Domains for 5abj:
      1. 2076203Domain d5abja_: 5abj A: [276643]
        Other proteins in same PDB: d5abjc_
        automated match to d4ceya_
        complexed with cl, na, ym2
      2. 2076204Domain d5abjb_: 5abj B: [276642]
        Other proteins in same PDB: d5abjc_
        automated match to d4jgyb_
        complexed with cl, na, ym2
    2. Domains for 5c4w:
      1. 2076200Domain d5c4wa_: 5c4w A: [276273]
        Other proteins in same PDB: d5c4wc_
        automated match to d4ceya_
        complexed with cl, k, na, sph
      2. 2076201Domain d5c4wb_: 5c4w B: [276272]
        Other proteins in same PDB: d5c4wc_
        automated match to d4jgyb_
        complexed with cl, k, na, sph
    3. Domain for 5c9a:
  3. 2076205Enterovirus a71 [TaxId:39054] [261947] (8 PDB entries)
    1. Domain for 3vbo:
    2. Domain for 4cdq:
    3. Domain for 4cdu:
    4. Domain for 4cdw:
    5. Domain for 4cdx:
    6. Domain for 4cew:
    7. Domain for 4cey:
    8. Domains for 4rqp:
      1. 2076212Domain d4rqpc_: 4rqp C: [261948]
        Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
        automated match to d1pov0_
      2. 2076213Domain d4rqpg_: 4rqp G: [261951]
        Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
        automated match to d1pov0_
      3. 2076214Domain d4rqpk_: 4rqp K: [261956]
        Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
        automated match to d1pov0_
      4. 2076215Domain d4rqpo_: 4rqp O: [261967]
        Other proteins in same PDB: d4rqpb_, d4rqpf_, d4rqpj_, d4rqpn_, d4rqpr_
        automated match to d1pov0_
  4. 2076217Enterovirus d68 [TaxId:42789] [269068] (5 PDB entries)
    1. Domains for 4wm7:
      1. 2076224Domain d4wm7a_: 4wm7 A: [269069]
        automated match to d1h8ta_
        complexed with w11
      2. 2076225Domain d4wm7c_: 4wm7 C: [269070]
        automated match to d3vbhc_
        complexed with w11
    2. Domains for 4wm8:
      1. 2076218Domain d4wm8a_: 4wm8 A: [269072]
        automated match to d1h8ta_
        complexed with dka
      2. 2076219Domain d4wm8c_: 4wm8 C: [269073]
        automated match to d3vbhc_
        complexed with dka
    3. Domains for 5bnn:
      1. 2076226Domain d5bnna_: 5bnn A: [279415]
        automated match to d1h8ta_
        complexed with 4u0
      2. 2076227Domain d5bnnc_: 5bnn C: [279414]
        automated match to d3vbhc_
        complexed with 4u0
    4. Domains for 5bno:
      1. 2076222Domain d5bnoa_: 5bno A: [279409]
        automated match to d1h8ta_
        complexed with 4u1
      2. 2076223Domain d5bnoc_: 5bno C: [279413]
        automated match to d3vbhc_
        complexed with 4u1
    5. Domains for 5bnp:
      1. 2076220Domain d5bnpa_: 5bnp A: [279411]
        automated match to d1h8ta_
        complexed with 4u2
      2. 2076221Domain d5bnpc_: 5bnp C: [279412]
        automated match to d3vbhc_
        complexed with 4u2
  5. 2076228Equine rhinitis a virus [TaxId:47000] [255665] (1 PDB entry)
  6. 2076230Foot-and-mouth disease virus [TaxId:12122] [255672] (1 PDB entry)
  7. 2076232Human coxsackievirus a16 [TaxId:31704] [256333] (2 PDB entries)
    1. Domains for 4jgy:
      1. 2076233Domain d4jgya_: 4jgy A: [252939]
        automated match to d1cov1_
      2. 2076234Domain d4jgyb_: 4jgy B: [262755]
        automated match to d4rqpc_
      3. 2076235Domain d4jgyc_: 4jgy C: [252940]
        automated match to d1cov3_
    2. Domains for 4jgz:
      1. 2076236Domain d4jgza_: 4jgz A: [252941]
        automated match to d1cov1_
      2. 2076237Domain d4jgzb_: 4jgz B: [262756]
        automated match to d4rqpc_
      3. 2076238Domain d4jgzc_: 4jgz C: [252942]
        automated match to d1cov3_
  8. 2076239Human enterovirus 71 [TaxId:39054] [226325] (11 PDB entries)
    1. Domains for 3vbf:
      1. 2076242Domain d3vbfa_: 3vbf A: [201218]
        Other proteins in same PDB: d3vbfc_
        automated match to d1d4m1_
        complexed with amp, cl, k, na, sph
      2. 2076243Domain d3vbfb_: 3vbf B: [262349]
        Other proteins in same PDB: d3vbfc_
        automated match to d4rqpc_
        complexed with amp, cl, k, na, sph
    2. Domains for 3vbh:
      1. 2076240Domain d3vbha_: 3vbh A: [217747]
        Other proteins in same PDB: d3vbhc_
        automated match to d1d4m1_
        complexed with cl, k, na, sph
      2. 2076241Domain d3vbhb_: 3vbh B: [262350]
        Other proteins in same PDB: d3vbhc_
        automated match to d4rqpc_
        complexed with cl, k, na, sph
    3. Domain for 3vbo:
    4. Domains for 3vbs:
      1. 2076248Domain d3vbsa_: 3vbs A: [250356]
        automated match to d3vbha_
        complexed with sph
      2. 2076249Domain d3vbsb_: 3vbs B: [262352]
        automated match to d4rqpc_
        complexed with sph
      3. 2076250Domain d3vbsc_: 3vbs C: [250357]
        automated match to d1cov3_
        complexed with sph
    5. Domains for 3zfe:
      1. 2076244Domain d3zfea_: 3zfe A: [201312]
        Other proteins in same PDB: d3zfec_
        automated match to d2plv1_
        complexed with cl, na, sph
      2. 2076245Domain d3zfeb_: 3zfe B: [262506]
        Other proteins in same PDB: d3zfec_
        automated match to d4rqpc_
        complexed with cl, na, sph
    6. Domain for 4cdq:
    7. Domain for 4cdu:
    8. Domain for 4cdw:
    9. Domain for 4cdx:
    10. Domain for 4cew:
    11. Domain for 4cey:
  9. 2076256Ryegrass mottle virus [TaxId:119910] [225341] (1 PDB entry)
  10. 2076260Seneca valley virus [TaxId:390157] [188689] (1 PDB entry)
  11. 2269635Aichivirus a [TaxId:72149] [312940] (1 PDB entry)
  12. 2276264Rhinovirus c [TaxId:463676] [319565] (2 PDB entries)
    1. Domains for 5jzg:
      1. 2276265Domain d5jzgc_: 5jzg C: [319566]
        automated match to d1pov0_
      2. 2276282Domain d5jzgb_: 5jzg B: [319583]
        automated match to d1d4m3_
    2. Domains for 5k0u:
      1. 2276281Domain d5k0ua_: 5k0u A: [319582]
        automated match to d1k5ma_
      2. 2276307Domain d5k0ub_: 5k0u B: [319608]
        automated match to d1d4m3_
  13. 2296414Coxsackievirus a6 [TaxId:86107] [339715] (1 PDB entry)

More info for Protein automated matches from b.121.4.0: automated matches

Timeline for Protein automated matches from b.121.4.0: automated matches: