SCOPe 2.08: Domain d5ganj_: 5gan J:

Lineage for d5ganj_ (5gan J:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.8: TPR-like [48452] (11 families)

5. Family a.118.8.1: Tetratricopeptide repeat (TPR) [48453] (21 proteins)
   this is a repeat family; one repeat unit is 1zb1 A:166-231 found in domain

6. Protein Pre-mRNA splicing factor 6 [346027] (2 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [346188] (1 PDB entry)

8. Domain d5ganj_: 5gan J: [345636]
   Other proteins in same PDB: d5gane_, d5ganf1, d5ganf2, d5gang1, d5gang2
   complexed with gtp
   has additional insertions and/or extensions that are not grouped together

Details for d5ganj_

PDB Entry: 5gan, 3.6 Å

PDB Description: the overall structure of the yeast spliceosomal u4/u6.u5 tri-snrnp at 3.7 angstrom

PDB Compounds: (J:) Pre-mRNA-splicing factor 6

SCOPe Domain Sequences for d5ganj_:

Sequence, based on SEQRES records:

>d5ganj_ a.118.8.1 (J:) Pre-mRNA splicing factor 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
gnvdlnklteerekllqsqidenlaqltknasnpiqvnkpnaatdalsylkdlendrvns
lsdatledlqkmrtilksyrkadptnpqgwiasarleekarkfsvakkiiengcqecprs
sdiwlenirlhesdvhycktlvatainfnptspllwfkaidlesttvnkyrvvrkalqei
prdeglwklavsfeadkaqvikmlekatqfipqsmdlltaytnlqsyhnakmtlnsfrki
lpqepeiwiistlleernnpdipvdklvsllkegllelskngykatlsawlkraealnda
pnsnltcqaivyailewlresgeyeselnnvdqilekmphskvqiavlkkliqwdpcdtv
lwsrlkmatesyhkieellaffqellfqtknsddiranmrekspgllmmyvseywkaqkg
dtrqtlvlidqiidfaphnldlrffkikllgrslqldelrdffqqtfssledfkisgter
lyykyvnflryqdlneeaikflnerclksfpichkfflqlgqiyhsmgniemsretylsg
trlvpncpllwvslskideidlknpvrarsildrgllknpddvlfyiakiqmeirlgnld
qaellvtqalqkfpsnallwveqiklfkhgnksslkktifqdalrrtqndhrvlleigvs
fyaeaqyetslkwleralkkcsrygdtwvwlfrtyarlgkdtvdlynmfdqceptygpew
iaasknvkmqyctpreillrlmnd

Sequence, based on observed residues (ATOM records):

>d5ganj_ a.118.8.1 (J:) Pre-mRNA splicing factor 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
gnvdlnklteerekllqsqidenlaqltknasnpiqvnkpnaatdalsylkdlendrvns
lsdatledlqkmrtilksyrkadptnpqgwiasarleekarkfsvakkiiengcqecprs
sdiwlenirlhesdvhycktlvatainfnptspllwfkaidlesttvnkyrvvrkalqei
prdeglwklavsfeadkaqvikmlekatqfipqsmdlltaytnlqsyhnakmtlnsfrki
lpqepeiwiistlleernnpklvsllkegllelskngykatlsawlkraealndapnsnl
tcqaivyailewlresgeyeselnnvdqilekmphskvqiavlkkliqwdpcdtvlwsrl
kmatesyeellaffqellfqtsddiranmrekspgllmmyvseywkaqkgdtrqtlvlid
qiidfaphnldlrffkikllgrslqldelrdffqqtfssledfkisgterlyykyvnflr
yqdlneeaikflnerclksfpichkfflqlgqiyhsmgniemsretylsgtrlvpncpll
wvslskideidlknpvrarsildrgllknpddvlfyiakiqmeirlgnldqaellvtqal
qkfpsnallwveqiklfkhgnksslkktifqdalrrtqndhrvlleigvsfyaeaqyets
lkwleralkkcsrygdtwvwlfrtyarlgkdtvdlynmfdqceptygpewiaasknctpr
eillrlmnd

Timeline for d5ganj_:

• d5ganj_ first appeared in SCOPe 2.07