SCOPe 2.08: Domain d3zefd1: 3zef D:2-156

Lineage for d3zefd1 (3zef D:2-156)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.182: U5 small nuclear riboprotein particle assembly factor Aar2 N-terminal domain-like [345889] (1 superfamily)
   10-stranded mixed beta sandwich with 3 helices surrounding the upper rim

4. Superfamily b.182.1: U5 small nuclear riboprotein particle assembly factor Aar2 N-terminal domain-like [345922] (1 family)
   N-terminal part of Pfam PF05282

5. Family b.182.1.1: U5 small nuclear riboprotein particle assembly factor Aar2 N-terminal domain-like [345967] (2 proteins)

6. Protein automated matches [346066] (1 species)
   not a true protein

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [346270] (1 PDB entry)

8. Domain d3zefd1: 3zef D:2-156 [345050]
   Other proteins in same PDB: d3zefa2, d3zefb1, d3zefb2, d3zefb3, d3zefb4, d3zefb5, d3zefd2
   automated match to d4i43a1
   protein/RNA complex

Details for d3zefd1

PDB Entry: 3zef, 3.1 Å

PDB Description: Crystal structure of Prp8:Aar2 complex: second crystal form at 3.1 A resolution

PDB Compounds: (D:) A1 cistron-splicing factor AAR2

SCOPe Domain Sequences for d3zefd1:

Sequence, based on SEQRES records:

>d3zefd1 b.182.1.1 (D:2-156) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ntvpftsapievtigidqysfnvkenqpfhgikdipighvhvihfqhadnssmrygywfd
crmgnfyiqydpkdglykmmeerdgakfenivhnfkerqmmvsypkideddtwynltefv
qmdkirkivrkdenqfsyvdssmttvqenellkss

Sequence, based on observed residues (ATOM records):

>d3zefd1 b.182.1.1 (D:2-156) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ntvpftsapievtigidqysfnvkenqpfhgikdipighvhvihfqhadnssmrygywfd
crmgnfyiqydpkdglykmmeerdgakfenimmvsypkideddtwynltefvqmdkirki
vrkdenqfsyvdssmttvqenellkss

Timeline for d3zefd1:

• d3zefd1 first appeared in SCOPe 2.07