PDB entry 3zef

View 3zef on RCSB PDB site
Description: Crystal structure of Prp8:Aar2 complex: second crystal form at 3.1 A resolution
Class: translation
Keywords: translation, pre-mRNA splicing, spliceosome, u5 snrnp
Deposited on 2012-12-05, released 2013-01-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-02-27, with a file datestamp of 2013-02-22.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.22253
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: A1 cistron-splicing factor AAR2
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3zefa1, d3zefa2
  • Chain 'B':
    Compound: Pre-mRNA-splicing factor 8
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P33334 (2-End)
      • expression tag (0-1)
      • engineered mutation (1078)
      • engineered mutation (1116)
    Domains in SCOPe 2.08: d3zefb1, d3zefb2, d3zefb3, d3zefb4, d3zefb5
  • Chain 'D':
    Compound: A1 cistron-splicing factor AAR2
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3zefd1, d3zefd2
  • Chain 'E':
    Compound: Pre-mRNA-splicing factor 8
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P33334 (2-End)
      • expression tag (0-1)
      • engineered mutation (1078)
      • engineered mutation (1116)

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3zefA (A:)
    mntvpftsapievtigidqysfnvkenqpfhgikdipighvhvihfqhadnssmrygywf
    dcrmgnfyiqydpkdglykmmeerdgakfenivhnfkerqmmvsypkideddtwynltef
    vqmdkirkivrkdenqfsyvdssmttvqenellksslqkagskmeakneddpahslnytv
    infksreairpghemedfldksyylntvmlqgifknssnyfgelqfaflnamffgnygss
    lqwhamielicssatvpkhmldkldeilyyqiktlpeqysdillnervwniclyssfqkn
    slhntekimenkypellgkdneddaliygisdeerddeddehnptivgglyyqrp
    

    Sequence, based on observed residues (ATOM records): (download)
    >3zefA (A:)
    ntvpftsapievtigidqysfnvkenqpfhgikdipighvhvihfqhadnssmrygywfd
    crmgnfyiqydpkdglykmmeerdgakfenivhnfkerqmmvsypkideddtwynltefv
    qmdkirkivrkdenqfsyvdssmttvqenelleddpahslnytvinfksreairpgheme
    dfldksyylntvmlqgifknssnyfgelqfaflnamffgnygsslqwhamielicssatv
    pkhmldkldeilyyqiktlpeqysdillnervwniclyssfqknslhntekimenkypel
    lgkddaliygddehnptivgglyyqrp
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3zefB (B:)
    sgvmvewlesrsfspipfppltykndtkilvlaledlkdvyaskvrlnasereelaliee
    aydnphdtlnrikkylltqrvfkpvditmmenyqnispvysvdplekitdayldqylwye
    adqrklfpnwikpsdseippllvykwtqginnlseiwdvsrgqsavllettlgemaekid
    ftllnrllrlivdpniadyitaknnvvinfkdmshvnkyglirglkfasfifqyyglvid
    llllgqeratdlagpannpnefmqfkskevekahpirlytryldriymlfhfeedegeel
    tdeylaenpdpnfensigynnrkcwpkdsrmrlirqdvnlgravfweiqsrvptsltsik
    wenafvsvysknnpnllfsmcgfevrilprqrmeevvsndegvwdlvdertkqrtakayl
    kvseeeikkfdsrirgilmasgsttftkvaakwntslislftyfreaivateplldilvk
    getriqnrvklglnskmptrfppavfytpkelgglgmisashilipasdlswskqtdtgi
    thfragmthedekliptifryittwenefldsqrvwaeyatkrqeaiqqnrrlafeeleg
    swdrgipristlfqrdrhtlaydrghrirrefkqyslernspfwwtnshhdgklwnlnay
    rtdviqalggietilehtlfkgtgfnsweglfwekasgfedsmqfkklthaqrtglsqip
    nrrftlwwsptinranvyvgflvqldltgiflhgkiptlkisliqifrahlwqkihesiv
    fdicqildgeldvlqiesvtketvhprksykmnssaaditmesvhewevskpsllhetnd
    sfkglitnkmwfdvqlrygdydshdisryvrakfldyttdnvsmypsptgvmigidlayn
    mydaygnwfnglkpliqnsmrtimkanpalyvlrerirkglqiyqssvqepflnssnyae
    lfnndiklfvddtnvyrvtvhktfegnvatkaingciftlnpktghlflkiihtsvwagq
    krlsqlakwktaeevsalvrslpkeeqpkqiivtrkamldplevhmldfpniairptenr
    lpfsaamsidklsdvvmkatepqmvlfniyddwldrlssytafsrltlllralktneesa
    kmillsdptitiksyhlwpsftdeqwitiesqmrdlilteygrkynvnisaltqteikdi
    ilgqnikapsvkrqkmaeleaarsekqndeeaagastvmktktinaqgeeivvvasadye
    sqtfssknewrksaiantllylrlkniyvsaddfveeqnvyvlpknllkkfieisdvkiq
    vaafiygmsakdhpkvkeiktvvlvpqlghvgsvqisnipdigdlpdteglellgwihtq
    teelkfmaasevathsklfadkkrdcidisifstpgsvslsaynltdegyqwgeenkdim
    nvlsegfeptfsthaqlllsdritgnfiipsgnvwnytfmgtafnqegdynfkygiplef
    ynemhrpvhflqfselagdeeleaeqidvfs
    

    Sequence, based on observed residues (ATOM records): (download)
    >3zefB (B:)
    sgvmvewlesrsfspipfppltykndtkilvlaledlkdvyaskvrlnasereelaliee
    aydnphdtlnrikkylltqrvfkpvditpvysvdplekitdayldqylwyeadqrklfpn
    wikpsdseippllvykwtqginnlseiwdvsrgqsavllettlgemaekidftllnrllr
    livdpniadyitaknnvvinfkdmshvnkyglirglkfasfifqyyglvidllllgqera
    tdlagpannpnefmqfkskevekahpirlytryldriymlfhfeedegeeltdeylaenp
    dpnfensigynnrkcwpkdsrmrlirqdvnlgravfweiqsrvptsltsikwenafvsvy
    sknnpnllfsmcgfevrilprqrmendegvwdlvdertkqrtakaylkvseeeikkfdsr
    irgilmasgsttftkvaakwntslislftyfreaivateplldilvkgetriqnrvklgl
    nskmptrfppavfytpkelgglgmisashilipasdlswskqtdtgithfragmthedek
    liptifryittwenefldsqrvwaeyatkrqeaiqqnrrlafeelegswdrgipristlf
    qrdrhtlaydrghrirrefkqyslernspfwwtnshhdgklwnlnayrtdviqalggiet
    ilehtlfkgtgfnsweglfwqrtglsqipnrrftlwwsptinranvyvgflvqldltgif
    lhgkiptlkisliqifrahlwqkihesivfdicqildgeldvlqiesvtketvhprksyk
    mnssaaditmesvhewevskpsllhetndsfkglitnkmwfdvqlrygdydshdisryvr
    akfldyttdnvsmypsptgvmigidlaynmydaygnwfnglkpliqnsmrtimkanpaly
    vlrerirkglqiyaelfnndiklfvddtnvyrvtvhktfegnvatkaingciftlnpktg
    hlflkiihtsvwrlsqlakwktaeevsalvrslpkeeqpkqiivtrkamldplevhmldf
    pniairptenrlpfsaamsidklsdvvmkatepqmvlfniyddwldrlssytafsrltll
    lralktneesakmillsdptitiksyhlwpsftdeqwitiesqmrdlilteygrkynvni
    saltqteikdiilgqnikapnewrksaiantllylrlkniyvsaddfveeqnvyvlpknl
    lkkfieisdvkiqvaafiygmsakdhpkvkeiktvvlvpqlghvgsvqisnipdigdlpd
    teglellgwihtqteelkfmaasevathsklfadkkrdcidisifstpgsvslsaynltd
    egyqwgeenkdimnvlsegfeptfsthaqlllsdritgnfiipsgnvwnytfmgtafnqe
    gdynfkygiplefynemh
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3zefD (D:)
    mntvpftsapievtigidqysfnvkenqpfhgikdipighvhvihfqhadnssmrygywf
    dcrmgnfyiqydpkdglykmmeerdgakfenivhnfkerqmmvsypkideddtwynltef
    vqmdkirkivrkdenqfsyvdssmttvqenellksslqkagskmeakneddpahslnytv
    infksreairpghemedfldksyylntvmlqgifknssnyfgelqfaflnamffgnygss
    lqwhamielicssatvpkhmldkldeilyyqiktlpeqysdillnervwniclyssfqkn
    slhntekimenkypellgkdneddaliygisdeerddeddehnptivgglyyqrp
    

    Sequence, based on observed residues (ATOM records): (download)
    >3zefD (D:)
    ntvpftsapievtigidqysfnvkenqpfhgikdipighvhvihfqhadnssmrygywfd
    crmgnfyiqydpkdglykmmeerdgakfenimmvsypkideddtwynltefvqmdkirki
    vrkdenqfsyvdssmttvqenellkssddpahslnytvinfksreairpghemedfldks
    yylntvmlqgifknssnyfgelqfaflnamffgnygsslqwhamielicssatvpkhmld
    kldeilyyqiktlpeqysdillnervwniclyssfqknslhntekimenkypellgkdli
    ygehnptivgglyyqrp
    

  • Chain 'E':
    No sequence available.