SCOPe 2.08: Domain d3wqpb2: 3wqp B:136-444

Lineage for d3wqpb2 (3wqp B:136-444)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
   automatically mapped to Pfam PF00016

5. Family c.1.14.0: automated matches [227297] (1 protein)
   not a true family

6. Protein automated matches [227123] (9 species)
   not a true protein

7. Species Pyrococcus kodakaraensis [TaxId:69014] [226763] (2 PDB entries)

8. Domain d3wqpb2: 3wqp B:136-444 [306812]
   Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
   automated match to d3a13a2
   complexed with cap, edo, mg; mutant

Details for d3wqpb2

PDB Entry: 3wqp, 2.25 Å

PDB Description: Crystal structure of Rubisco T289D mutant from Thermococcus kodakarensis

PDB Compounds: (B:) Ribulose bisphosphate carboxylase

SCOPe Domain Sequences for d3wqpb2:

Sequence; same for both SEQRES and ATOM records:

>d3wqpb2 c.1.14.0 (B:136-444) automated matches {Pyrococcus kodakaraensis [TaxId: 69014]}
fdgpafgiegvrkmleikdrpiygvvpkpkvgyspeefeklaydllsngadymkddenlt
spwynrfeeraeimakiidkvenetgekktwfanitadllemeqrlevladlglkhamvd
vvitgwgalryirdlaadyglaihghramhaafdrnpyhgismfvlaklyrligidqlhv
gtagagkleggkwdviqnarilreshykpdendvfhleqkfysikaafptssgglhpgni
qpviealgtdivlqlgggtlghpdgpaagaravrqaidaimqgipldeyakthkelaral
ekwghvtpv

Timeline for d3wqpb2:

• d3wqpb2 first appeared in SCOPe 2.06
  
• d3wqpb2 appears in SCOPe 2.07