Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2088460Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families) (S)
    automatically mapped to Pfam PF00016
  5. 2088773Family c.1.14.0: automated matches [227297] (1 protein)
    not a true family
  6. 2088774Protein automated matches [227123] (7 species)
    not a true protein

Species:

  1. 2088775Alicyclobacillus acidocaldarius [TaxId:521098] [229001] (1 PDB entry)
  2. 2088780Bacillus cereus [TaxId:226900] [232179] (1 PDB entry)
  3. 2088783Bacillus subtilis [TaxId:1423] [231736] (1 PDB entry)
  4. 2088788Geobacillus kaustophilus [TaxId:1462] [231052] (4 PDB entries)
    1. Domains for 2oej:
      1. 2088794Domain d2oeja2: 2oej A:121-413 [231061]
        Other proteins in same PDB: d2oeja1, d2oejb1
        automated match to d4nasa2
        complexed with po4; mutant
      2. 2088795Domain d2oejb2: 2oej B:121-413 [231057]
        Other proteins in same PDB: d2oeja1, d2oejb1
        automated match to d4nasa2
        complexed with po4; mutant
    2. Domains for 2oek:
      1. 2088790Domain d2oeka2: 2oek A:121-413 [231059]
        Other proteins in same PDB: d2oeka1, d2oekb1
        automated match to d4nasa2
        complexed with mg
      2. 2088791Domain d2oekb2: 2oek B:121-413 [231058]
        Other proteins in same PDB: d2oeka1, d2oekb1
        automated match to d4nasa2
        complexed with mg
    3. Domains for 2oel:
      1. 2088792Domain d2oela2: 2oel A:121-413 [231056]
        Other proteins in same PDB: d2oela1, d2oelb1
        automated match to d4nasa2
        complexed with co3, mg
      2. 2088793Domain d2oelb2: 2oel B:121-413 [231055]
        Other proteins in same PDB: d2oela1, d2oelb1
        automated match to d4nasa2
        complexed with co3, mg
    4. Domain for 2oem:
  5. 2088796Pyrococcus kodakaraensis [TaxId:69014] [226763] (2 PDB entries)
    1. Domains for 3a13:
      1. 2088797Domain d3a13a2: 3a13 A:136-444 [208062]
        Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
        automated match to d1bxna1
        complexed with ca, cap, mg; mutant
      2. 2088798Domain d3a13b2: 3a13 B:136-444 [208064]
        Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
        automated match to d1bxna1
        complexed with ca, cap, mg; mutant
      3. 2088799Domain d3a13c2: 3a13 C:136-444 [208066]
        Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
        automated match to d1bxna1
        complexed with ca, cap, mg; mutant
      4. 2088800Domain d3a13d2: 3a13 D:136-444 [208068]
        Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
        automated match to d1bxna1
        complexed with ca, cap, mg; mutant
      5. 2088801Domain d3a13e2: 3a13 E:136-444 [208070]
        Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
        automated match to d1bxna1
        complexed with ca, cap, mg; mutant
      6. 2088802Domain d3a13f2: 3a13 F:136-444 [208072]
        Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
        automated match to d1bxna1
        complexed with ca, cap, mg; mutant
      7. 2088803Domain d3a13g2: 3a13 G:136-444 [208074]
        Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
        automated match to d1bxna1
        complexed with ca, cap, mg; mutant
      8. 2088804Domain d3a13h2: 3a13 H:136-444 [208076]
        Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
        automated match to d1bxna1
        complexed with ca, cap, mg; mutant
      9. 2088805Domain d3a13i2: 3a13 I:136-444 [208078]
        Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
        automated match to d1bxna1
        complexed with ca, cap, mg; mutant
      10. 2088806Domain d3a13j2: 3a13 J:136-444 [208080]
        Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
        automated match to d1bxna1
        complexed with ca, cap, mg; mutant
    2. Domains for 3wqp:
      1. 2088807Domain d3wqpa2: 3wqp A:136-444 [306810]
        Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
        automated match to d3a13a2
        complexed with cap, edo, mg; mutant
      2. 2088808Domain d3wqpb2: 3wqp B:136-444 [306812]
        Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
        automated match to d3a13a2
        complexed with cap, edo, mg; mutant
      3. 2088809Domain d3wqpc2: 3wqp C:136-444 [306814]
        Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
        automated match to d3a13a2
        complexed with cap, edo, mg; mutant
      4. 2088810Domain d3wqpd2: 3wqp D:136-444 [306816]
        Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
        automated match to d3a13a2
        complexed with cap, edo, mg; mutant
      5. 2088811Domain d3wqpe2: 3wqp E:136-444 [306818]
        Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
        automated match to d3a13a2
        complexed with cap, edo, mg; mutant
      6. 2088812Domain d3wqpg2: 3wqp G:136-444 [306822]
        Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
        automated match to d3a13a2
        complexed with cap, edo, mg; mutant
      7. 2088813Domain d3wqph2: 3wqp H:136-444 [306824]
        Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
        automated match to d3a13a2
        complexed with cap, edo, mg; mutant
      8. 2088814Domain d3wqpi2: 3wqp I:136-444 [306826]
        Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
        automated match to d3a13a2
        complexed with cap, edo, mg; mutant
      9. 2088815Domain d3wqpj2: 3wqp J:136-444 [306828]
        Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
        automated match to d3a13a2
        complexed with cap, edo, mg; mutant
  6. 2088816Thermococcus kodakaraensis [TaxId:69014] [226770] (2 PDB entries)
    1. Domains for 3kdn:
      1. 2088817Domain d3kdna2: 3kdn A:136-444 [212304]
        Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      2. 2088818Domain d3kdnb2: 3kdn B:136-444 [212306]
        Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      3. 2088819Domain d3kdnc2: 3kdn C:136-444 [212308]
        Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      4. 2088820Domain d3kdnd2: 3kdn D:136-444 [212310]
        Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      5. 2088821Domain d3kdne2: 3kdn E:136-444 [212312]
        Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      6. 2088822Domain d3kdnf2: 3kdn F:136-444 [212314]
        Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      7. 2088823Domain d3kdng2: 3kdn G:136-444 [212316]
        Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      8. 2088824Domain d3kdnh2: 3kdn H:136-444 [212318]
        Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      9. 2088825Domain d3kdni2: 3kdn I:136-444 [212320]
        Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      10. 2088826Domain d3kdnj2: 3kdn J:136-444 [212322]
        Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
    2. Domains for 3kdo:
      1. 2088827Domain d3kdoa2: 3kdo A:136-444 [212324]
        Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      2. 2088828Domain d3kdob2: 3kdo B:136-444 [212326]
        Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      3. 2088829Domain d3kdoc2: 3kdo C:136-444 [212328]
        Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      4. 2088830Domain d3kdod2: 3kdo D:136-444 [212330]
        Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      5. 2088831Domain d3kdoe2: 3kdo E:136-444 [212332]
        Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      6. 2088832Domain d3kdof2: 3kdo F:136-444 [212334]
        Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      7. 2088833Domain d3kdog2: 3kdo G:136-444 [212336]
        Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      8. 2088834Domain d3kdoh2: 3kdo H:136-444 [212338]
        Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      9. 2088835Domain d3kdoi2: 3kdo I:136-444 [212340]
        Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
      10. 2088836Domain d3kdoj2: 3kdo J:136-444 [212342]
        Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
        automated match to d1bxna1
        complexed with cap, mg; mutant
  7. 2088837Thermococcus kodakarensis [TaxId:69014] [311351] (1 PDB entry)

More info for Protein automated matches from c.1.14.0: automated matches

Timeline for Protein automated matches from c.1.14.0: automated matches: