SCOPe 2.08: Domain d1bvuf1: 1bvu F:181-418

Lineage for d1bvuf1 (1bvu F:181-418)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain [51883] (12 proteins)
   extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site

6. Protein Glutamate dehydrogenase [51884] (8 species)

7. Species Thermococcus litoralis [TaxId:2265] [51887] (1 PDB entry)

8. Domain d1bvuf1: 1bvu F:181-418 [30231]
   Other proteins in same PDB: d1bvua2, d1bvub2, d1bvuc2, d1bvud2, d1bvue2, d1bvuf2
   has additional insertions and/or extensions that are not grouped together

Details for d1bvuf1

PDB Entry: 1bvu, 2.5 Å

PDB Description: glutamate dehydrogenase from thermococcus litoralis

PDB Compounds: (F:) protein (glutamate dehydrogenase)

SCOPe Domain Sequences for d1bvuf1:

Sequence; same for both SEQRES and ATOM records:

>d1bvuf1 c.2.1.7 (F:181-418) Glutamate dehydrogenase {Thermococcus litoralis [TaxId: 2265]}
ggivarmdatargasytvreaakalgmdlkgktiaiqgygnagyymakimseeygmkvva
vsdtkggiynpdglnadevlawkkktgsvkdfpgatnitneellelevdvlapsaieevi
tkknadnikakivaelangpttpeadeilyekgiliipdflcnaggvtvsyfewvqnitg
dywtveetrakldkkmtkafwdvynthkekninmrdaayvvavsrvyqamkdrgwikk

Timeline for d1bvuf1:

• d1bvuf1 first appeared (with stable ids) in SCOP 1.55
  
• d1bvuf1 appears in SCOPe 2.07