Lineage for Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2841004Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 2841005Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 2845190Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain [51883] (12 proteins)
    extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site

Proteins:

  1. 2845191Glutamate dehydrogenase [51884] (8 species)
    1. 2845192Species Clostridium symbiosum [TaxId:1512] [51885] (4 PDB entries)
    2. 2845199Species Cow (Bos taurus) [TaxId:9913] [51889] (6 PDB entries)
    3. 2845245Species Human (Homo sapiens) [TaxId:9606] [75115] (2 PDB entries)
    4. 2845258Species Pyrobaculum islandicum [TaxId:2277] [117436] (1 PDB entry)
      Uniprot Q9Y8I4
    5. 2845265Species Pyrococcus furiosus [TaxId:2261] [51886] (1 PDB entry)
    6. 2845269Species Thermococcus litoralis [TaxId:2265] [51887] (1 PDB entry)
    7. 2845276Species Thermococcus profundus [TaxId:49899] [63943] (1 PDB entry)
    8. 2845283Species Thermotoga maritima [TaxId:2336] [51888] (3 PDB entries)
  2. 2845302Glutamyl tRNA-reductase middle domain [69413] (1 species)
    other domains of this protein are distinct from those usually associated with the family domain
  3. 2845305Leucine dehydrogenase [51890] (1 species)
  4. 2845309Malate oxidoreductase (malic enzyme) [110434] (1 species)
  5. 2845315Methylene-tetrahydromethanopterin dehydrogenase [82303] (1 species)
  6. 2845323Methylenetetrahydrofolate dehydrogenase/cyclohydrolase [51894] (3 species)
    the two-domain organization is similar to that of aminoacid dehydrogenases, but both domains are truncated
    1. 2845324Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [51897] (2 PDB entries)
    2. 2845327Species Escherichia coli [TaxId:562] [51896] (1 PDB entry)
    3. 2845329Species Human (Homo sapiens) [TaxId:9606] [51895] (7 PDB entries)
  7. 2845344Mitochondrial NAD(P)-dependent malic enzyme [51898] (3 species)
    includes C-terminal additional subdomains
    1. 2845345Species Domestic pigeon (Columba livia) [TaxId:8932] [75116] (1 PDB entry)
    2. 2845362Species Human (Homo sapiens) [TaxId:9606] [51899] (10 PDB entries)
    3. 2845405Species Pig roundworm (Ascaris suum) [TaxId:6253] [75117] (2 PDB entries)
  8. 2845410Phenylalanine dehydrogenase [51892] (1 species)
  9. 2845420Putative shikimate dehydrogenase YdiB [82305] (1 species)
  10. 2845428Shikimate 5-dehydrogenase AroE [89538] (6 species)
    1. 2845429Species Aquifex aeolicus [TaxId:63363] [225281] (3 PDB entries)
    2. 2845444Species Escherichia coli [TaxId:562] [89539] (1 PDB entry)
    3. 2845449Species Geobacillus kaustophilus [TaxId:1462] [225426] (1 PDB entry)
    4. 2845452Species Haemophilus influenzae [TaxId:727] [102173] (2 PDB entries)
    5. 2845456Species Methanococcus jannaschii [TaxId:2190] [89540] (1 PDB entry)
      MJ1084
    6. 2845459Species Staphylococcus epidermidis [TaxId:176279] [225658] (2 PDB entries)
  11. 2845462Shikimate 5-dehydrogenase-like protein HI0607 [89536] (1 species)
  12. 2845468automated matches [227005] (6 species)
    not a true protein
    1. 2845469Species Cow (Bos taurus) [TaxId:9913] [225674] (6 PDB entries)
    2. 2845506Species Escherichia coli [TaxId:83333] [346973] (3 PDB entries)
    3. 2845519Species Geobacillus stearothermophilus [TaxId:272567] [361597] (1 PDB entry)
    4. 2845528Species Human (Homo sapiens) [TaxId:9606] [353659] (2 PDB entries)
    5. 2845541Species Salmonella enterica [TaxId:90371] [226190] (1 PDB entry)
    6. Species Thermotoga maritima [TaxId:2336] [255206] (1 PDB entry)

More info for Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain

Timeline for Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain: