SCOPe 2.04: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.04
Class g: Small proteins [56992] (91 folds)
Fold g.41: Rubredoxin-like [57769] (17 superfamilies)
metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2
Superfamily g.41.5: Rubredoxin-like [57802] (4 families)
Family g.41.5.0: automated matches [232942] (1 protein)
not a true family
Protein automated matches [232943] (2 species)
not a true protein

Species:

Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId:887] [255262] (3 PDB entries)
1. Domains for 2ji1:
  1. Domain d2ji1a2: 2ji1 A:2-37 [138332]
    Other proteins in same PDB: d2ji1a1, d2ji1b1, d2ji1c1, d2ji1d1
    automated match to d2ji2a2
    complexed with ca, fe, fe2
  2. Domain d2ji1b2: 2ji1 B:2-37 [138334]
    Other proteins in same PDB: d2ji1a1, d2ji1b1, d2ji1c1, d2ji1d1
    automated match to d2ji2a2
    complexed with ca, fe, fe2
  3. Domain d2ji1c2: 2ji1 C:2-37 [138336]
    Other proteins in same PDB: d2ji1a1, d2ji1b1, d2ji1c1, d2ji1d1
    automated match to d2ji2a2
    complexed with ca, fe, fe2
  4. Domain d2ji1d2: 2ji1 D:2-37 [138338]
    Other proteins in same PDB: d2ji1a1, d2ji1b1, d2ji1c1, d2ji1d1
    automated match to d2ji2a2
    complexed with ca, fe, fe2
2. Domains for 2ji2:
  1. Domain d2ji2a2: 2ji2 A:1-37 [138340]
    Other proteins in same PDB: d2ji2a1, d2ji2b1, d2ji2c1, d2ji2d1
    automated match to d2ji2a2
    complexed with ca, fe, fe2, no3; mutant
  2. Domain d2ji2b2: 2ji2 B:2-37 [138342]
    Other proteins in same PDB: d2ji2a1, d2ji2b1, d2ji2c1, d2ji2d1
    automated match to d2ji2b2
    complexed with ca, fe, fe2, no3; mutant
  3. Domain d2ji2c2: 2ji2 C:1-37 [138344]
    Other proteins in same PDB: d2ji2a1, d2ji2b1, d2ji2c1, d2ji2d1
    automated match to d2ji2c2
    complexed with ca, fe, fe2, no3; mutant
  4. Domain d2ji2d2: 2ji2 D:2-37 [138346]
    Other proteins in same PDB: d2ji2a1, d2ji2b1, d2ji2c1, d2ji2d1
    automated match to d2ji2c2
    complexed with ca, fe, fe2, no3; mutant
3. Domains for 2ji3:
  1. Domain d2ji3a2: 2ji3 A:1-37 [138348]
    Other proteins in same PDB: d2ji3a1, d2ji3b1, d2ji3c1, d2ji3d1
    automated match to d2ji2b2
    complexed with ca, fe, no3, per; mutant
  2. Domain d2ji3b2: 2ji3 B:2-37 [138350]
    Other proteins in same PDB: d2ji3a1, d2ji3b1, d2ji3c1, d2ji3d1
    automated match to d1vzga2
    complexed with ca, fe, no3, per; mutant
  3. Domain d2ji3c2: 2ji3 C:1-37 [138352]
    Other proteins in same PDB: d2ji3a1, d2ji3b1, d2ji3c1, d2ji3d1
    automated match to d1vzga2
    complexed with ca, fe, no3, per; mutant
  4. Domain d2ji3d2: 2ji3 D:2-37 [138354]
    Other proteins in same PDB: d2ji3a1, d2ji3b1, d2ji3c1, d2ji3d1
    automated match to d1vzga2
    complexed with ca, fe, no3, per; mutant
Pyrococcus furiosus [TaxId:2261] [232944] (4 PDB entries)
1. Domains for 3mps:
  1. Domain d3mpsa2: 3mps A:135-171 [232945]
    Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
    automated match to d1nnqa2
    complexed with fe, feo, peo
  2. Domain d3mpsb2: 3mps B:135-171 [232947]
    Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
    automated match to d1nnqa2
    complexed with fe, feo, peo
  3. Domain d3mpsd2: 3mps D:135-171 [239477]
    Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
    automated match to d3mpsa2
    complexed with fe, feo, peo
  4. Domain d3mpsf2: 3mps F:135-171 [239479]
    Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
    automated match to d3mpsa2
    complexed with fe, feo, peo
  5. Domain d3mpsg2: 3mps G:135-171 [239481]
    Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
    automated match to d3mpsa2
    complexed with fe, feo, peo
  6. Domain d3mpsh2: 3mps H:135-171 [239483]
    Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
    automated match to d3mpsa2
    complexed with fe, feo, peo
  7. Domain d3mpsi2: 3mps I:135-171 [239485]
    Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
    automated match to d3mpsa2
    complexed with fe, feo, peo
  8. Domain d3mpsk2: 3mps K:135-171 [239487]
    Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
    automated match to d3mpsa2
    complexed with fe, feo, peo
2. Domains for 3pwf:
  1. Domain d3pwfa2: 3pwf A:135-171 [248702]
    Other proteins in same PDB: d3pwfa1, d3pwfb1
    automated match to d3mpsa2
    complexed with fe2
  2. Domain d3pwfb2: 3pwf B:135-171 [248704]
    Other proteins in same PDB: d3pwfa1, d3pwfb1
    automated match to d3mpsa2
    complexed with fe2
3. Domains for 3pza:
  1. Domain d3pzaa2: 3pza A:135-171 [248732]
    Other proteins in same PDB: d3pzaa1, d3pzab1
    automated match to d3mpsa2
    complexed with fe2, peo
  2. Domain d3pzab2: 3pza B:135-171 [248734]
    Other proteins in same PDB: d3pzaa1, d3pzab1
    automated match to d3mpsa2
    complexed with fe2, peo
4. Domains for 3qvd:
  1. Domain d3qvda2: 3qvd A:135-171 [249002]
    Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
    automated match to d3mpsa2
    complexed with fe, fe2, peo
  2. Domain d3qvdb2: 3qvd B:135-171 [249004]
    Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
    automated match to d3mpsa2
    complexed with fe, fe2, peo
  3. Domain d3qvdc2: 3qvd C:135-171 [249006]
    Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
    automated match to d3mpsa2
    complexed with fe, fe2, peo
  4. Domain d3qvdd2: 3qvd D:135-171 [249008]
    Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
    automated match to d3mpsa2
    complexed with fe, fe2, peo
  5. Domain d3qvde2: 3qvd E:135-171 [249010]
    Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
    automated match to d3mpsa2
    complexed with fe, fe2, peo
  6. Domain d3qvdf2: 3qvd F:135-171 [249012]
    Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
    automated match to d3mpsa2
    complexed with fe, fe2, peo
  7. Domain d3qvdg2: 3qvd G:135-171 [249014]
    Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
    automated match to d3mpsa2
    complexed with fe, fe2, peo
  8. Domain d3qvdh2: 3qvd H:135-171 [249016]
    Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
    automated match to d3mpsa2
    complexed with fe, fe2, peo

More info for Protein automated matches from g.41.5.0: automated matches

Timeline for Protein automated matches from g.41.5.0: automated matches:

Protein automated matches from g.41.5.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from g.41.5.0: automated matches appears in SCOPe 2.05
Protein automated matches from g.41.5.0: automated matches appears in the current release, SCOPe 2.08