SCOPe 2.08: Domain d2csdb4: 2csd B:410-464

Lineage for d2csdb4 (2csd B:410-464)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.60: SAM domain-like [47768] (17 superfamilies)
   4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins

4. Superfamily a.60.2: RuvA domain 2-like [47781] (7 families)
   duplication: contains two helix-hairpin-helix (HhH) motifs

5. Family a.60.2.4: Topoisomerase V repeat domain [140626] (1 protein)
   this is a repeat family; one repeat unit is 2csb A:351-409 found in domain

6. Protein Topoisomerase V [140627] (1 species)

7. Species Methanopyrus kandleri [TaxId:2320] [140628] (2 PDB entries)
   Uniprot Q977W1 294-350! Uniprot Q977W1 351-409! Uniprot Q977W1 410-464! Uniprot Q977W1 465-519

8. Domain d2csdb4: 2csd B:410-464 [203830]
   Other proteins in same PDB: d2csda1, d2csdb1
   automated match to d2csba3

Details for d2csdb4

PDB Entry: 2csd, 2.9 Å

PDB Description: crystal structure of topoisomerase v (61 kda fragment)

PDB Compounds: (B:) Topoisomerase V

SCOPe Domain Sequences for d2csdb4:

Sequence; same for both SEQRES and ATOM records:

>d2csdb4 a.60.2.4 (B:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
laeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervlrslv

Timeline for d2csdb4:

• d2csdb4 first appeared in SCOPe 2.03
  
• d2csdb4 appears in SCOPe 2.07