SCOPe 2.08: Domain d1mmod_: 1mmo D:

Lineage for d1mmod_ (1mmo D:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.25: Ferritin-like [47239] (6 superfamilies)
   core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection

4. Superfamily a.25.1: Ferritin-like [47240] (10 families)
   contains bimetal-ion centre in the middle of the bundle

5. Family a.25.1.2: Ribonucleotide reductase-like [47253] (9 proteins)

6. Protein Methane monooxygenase hydrolase alpha subunit [88789] (2 species)

7. Species Methylococcus capsulatus [TaxId:414] [88790] (26 PDB entries)

8. Domain d1mmod_: 1mmo D: [16770]
   Other proteins in same PDB: d1mmob_, d1mmoc_, d1mmog_, d1mmoh_
   complexed with acy, fe
   has additional subdomain(s) that are not in the common domain

Details for d1mmod_

PDB Entry: 1mmo, 2.2 Å

PDB Description: crystal structure of a bacterial non-haem iron hydroxylase that catalyses the biological oxidation of methane

PDB Compounds: (D:) methane monooxygenase hydrolase (alpha chain)

SCOPe Domain Sequences for d1mmod_:

Sequence; same for both SEQRES and ATOM records:

>d1mmod_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]}
aanraptsvnaqevhrwlqsfnwdfknnrtkyatkykmanetkeqfkliakeyarmeavk
derqfgslqvaltrlnagvrvhpkwnetmkvvsnflevgeynaiaatgmlwdsaqaaeqk
ngylaqvldeirhthqcayvnyyfakngqdpaghndarrtrtigplwkgmkrvfsdgfis
gdavecslnlqlvgeacftnplivavtewaaangdeitptvflsietdelrhmangyqtv
vsiandpasakylntdlnnafwtqqkyftpvlgmlfeygskfkvepwvktwdrwvyedwg
giwigrlgkygvesprslkdakqdaywahhdlyllayalwptgffrlalpdqeemewfea
nypgwydhygkiyeewrargcedpssgfiplmwfiennhpiyidrvsqvpfcpslakgas
tlrvheyngemhtfsdqwgermwlaeperyecqnifeqyegrelseviaelhglrsdgkt
liaqphvrgdklwtlddikrlncvfknpvkaf

Timeline for d1mmod_:

• d1mmod_ first appeared (with stable ids) in SCOP 1.55
  
• d1mmod_ appears in SCOPe 2.07