SCOPe 2.08: Domain d2vhmv1: 2vhm V:1-94

Lineage for d2vhmv1 (2vhm V:1-94)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.53: Ribosomal protein L25-like [50714] (1 superfamily)
   barrel, closed; n=6, S=10; complex topology

4. Superfamily b.53.1: Ribosomal protein L25-like [50715] (3 families)

5. Family b.53.1.1: Ribosomal protein L25-like [50716] (2 proteins)

6. Protein Ribosomal protein L25 [50717] (1 species)

7. Species Escherichia coli [TaxId:562] [50718] (32 PDB entries)

8. Domain d2vhmv1: 2vhm V:1-94 [153085]
   Other proteins in same PDB: d2vhm01, d2vhm11, d2vhm31, d2vhm41, d2vhmc1, d2vhmc2, d2vhmd1, d2vhme1, d2vhmf1, d2vhmg1, d2vhmg2, d2vhmh1, d2vhmh2, d2vhmi1, d2vhmi2, d2vhmj1, d2vhmk1, d2vhml1, d2vhmm1, d2vhmn1, d2vhmo1, d2vhmp1, d2vhmq1, d2vhmr1, d2vhms1, d2vhmt1, d2vhmu1, d2vhmw1, d2vhmx1, d2vhmy1, d2vhmz1
   protein/RNA complex; complexed with mg
   protein/RNA complex; complexed with mg

Details for d2vhmv1

PDB Entry: 2vhm, 3.74 Å

PDB Description: Structure of PDF binding helix in complex with the ribosome

PDB Compounds: (V:) 50S ribosomal protein L25

SCOPe Domain Sequences for d2vhmv1:

Sequence; same for both SEQRES and ATOM records:

>d2vhmv1 b.53.1.1 (V:1-94) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
mftinaevrkeqgkgasrrlraankfpaiiyggkeaplaieldhdkvmnmqakaefysev
ltivvdgkeikvkaqdvqrhpykpklqhidfvra

Timeline for d2vhmv1:

• d2vhmv1 first appeared in SCOP 1.75
  
• d2vhmv1 appears in SCOPe 2.07