SCOPe 2.07: Domain d1ya0b_: 1ya0 B:

Lineage for d1ya0b_ (1ya0 B:)

1. Root: SCOPe 2.07

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.8: TPR-like [48452] (10 families)

5. Family a.118.8.1: Tetratricopeptide repeat (TPR) [48453] (21 proteins)
   this is a repeat family; one repeat unit is 1zb1 A:166-231 found in domain

6. Protein automated matches [190103] (5 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [186825] (13 PDB entries)

8. Domain d1ya0b_: 1ya0 B: [122786]
   Other proteins in same PDB: d1ya0a1
   automated match to d1ya0a1
   complexed with so4

Details for d1ya0b_

PDB Entry: 1ya0, 2.55 Å

PDB Description: Crystal structure of the N-terminal domain of human SMG7

PDB Compounds: (B:) SMG-7 transcript variant 2

SCOPe Domain Sequences for d1ya0b_:

Sequence, based on SEQRES records:

>d1ya0b_ a.118.8.1 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
mslqsaqylrqaevlkadmtdsklgpaevwtsrqalqdlyqkmlvtdleyaldkkveqdl
wnhafknqittlqgqaknranpnrsevqanlslfleaasgfytqllqelctvfnvdlpcr
vkssqlgiisnkqthtsaivkpqssscsyicqhclvhlgdiaryrnqtsqaesyyrhaaq
lvpsngqpynqlailasskgdhlttifyycrsiavkfpfpaastnlqkalskalesrdev
ktkwgvsdfikafikfhghvylsksleklsplrekleeqfkellfqkafnsqqlvhvtvi
nlfqlhhlrdfsneteqhtysqdeqlcwtqllalfmsflgilckcplqnesqeesynayp
lpavkvsmdwlrlrprvfqeavvderqyiwpwlisllnsfhpheedlssisatplpeefe
lqgflalrpsfrnldfskghqgitgdkegqqrrirqqrlisigkwiadnqprliqcenev
gkllfiteipeliledp

Sequence, based on observed residues (ATOM records):

>d1ya0b_ a.118.8.1 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
mslqsaqylrqaevlkadmtdsklgpaevwtsrqalqdlyqkmlvtdleyaldkkveqdl
wnhafknqittlqgqaknranpnrsevqanlslfleaasgfytqllqelctvfnvdlpcp
qssscsyicqhclvhlgdiaryrnqtsqaesyyrhaaqlvpsngqpynqlailasskgdh
lttifyycrsiavkfpfpaastnlqkalskalesrdevktkwgvsdfikafikfhghvyl
sksleklsplrekleeqfkellfqkafnsqqlvhvtvinlfqlhhlrdfsneteqhtysq
deqlcwtqllalfmsflgilckcplqneesynayplpavkvsmdwlrlrprvfqeavvde
rqyiwpwlisllnsfhpheedlssisatplpeefelqgflalrpsfrnldfskkegqqrr
irqqrlisigkwiadnqprliqcenevgkllfiteipeliledp

Timeline for d1ya0b_:

• d1ya0b_ first appeared in SCOP 1.73, called d1ya0b1
  
• d1ya0b_ appears in SCOPe 2.06
  
• d1ya0b_ appears in the current release, SCOPe 2.08