Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2338494Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
    multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
  4. 2339718Superfamily a.118.8: TPR-like [48452] (10 families) (S)
  5. 2339719Family a.118.8.1: Tetratricopeptide repeat (TPR) [48453] (21 proteins)
    this is a repeat family; one repeat unit is 1zb1 A:166-231 found in domain
  6. 2339863Protein automated matches [190103] (5 species)
    not a true protein

Species:

  1. 2339864Bacillus subtilis [TaxId:1423] [161323] (1 PDB entry)
  2. 2339866Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [226182] (1 PDB entry)
  3. 2339868Escherichia coli [TaxId:83333] [371847] (3 PDB entries)
    1. Domains for 6iqq:
      1. 2339871Domain d6iqqa_: 6iqq A: [371869]
        automated match to d5wqlb_
        complexed with ca; mutant
      2. 2339872Domain d6iqqb_: 6iqq B: [371871]
        automated match to d5wqlb_
        complexed with ca; mutant
    2. Domains for 6iqs:
      1. 2339869Domain d6iqsa_: 6iqs A: [371861]
        automated match to d5wqlb_
        mutant
      2. 2339870Domain d6iqsb_: 6iqs B: [371880]
        automated match to d5wqlb_
        mutant
    3. Domain for 6iqu:
  4. 2339874Human (Homo sapiens) [TaxId:9606] [186825] (13 PDB entries)
    1. Domain for 1wm5:
    2. Domain for 1ya0:
    3. Domain for 2c0l:
    4. Domains for 2c0m:
      1. 2339890Domain d2c0ma_: 2c0m A: [129596]
        automated match to d1fcha_
      2. 2339891Domain d2c0mb_: 2c0m B: [129597]
        automated match to d1fcha_
      3. 2339892Domain d2c0mc_: 2c0m C: [129598]
        automated match to d1fcha_
      4. 2339893Domain d2c0mf_: 2c0m F: [129599]
        automated match to d1fcha_
    5. Domains for 2j9q:
      1. 2339888Domain d2j9qa2: 2j9q A:315-639 [138152]
        Other proteins in same PDB: d2j9qa3
        automated match to d1fcha_
        complexed with sr
      2. 2339889Domain d2j9qb_: 2j9q B: [161474]
        Other proteins in same PDB: d2j9qa3
        automated match to d1fcha_
        complexed with sr
    6. Domain for 2v5f:
    7. Domains for 2vyi:
      1. 2339876Domain d2vyia_: 2vyi A: [153706]
        automated match to d2vyib_
      2. 2339877Domain d2vyib_: 2vyi B: [231362]
        automated match to d2vyia1
    8. Domains for 3imz:
      1. 2339881Domain d3imzb_: 3imz B: [305573]
        Other proteins in same PDB: d3imza_, d3imzc_
        automated match to d2j9qa_
        complexed with btb, plp
      2. 2339882Domain d3imzd_: 3imz D: [305575]
        Other proteins in same PDB: d3imza_, d3imzc_
        automated match to d2j9qa_
        complexed with btb, plp
    9. Domains for 3r9a:
      1. 2339878Domain d3r9ab_: 3r9a B: [184856]
        Other proteins in same PDB: d3r9aa_, d3r9ac_
        automated match to d1fcha_
        complexed with btb
      2. 2339879Domain d3r9ad_: 3r9a D: [184858]
        Other proteins in same PDB: d3r9aa_, d3r9ac_
        automated match to d1fcha_
        complexed with btb
    10. Domains for 4kxk:
      1. 2339894Domain d4kxkb_: 4kxk B: [261081]
        Other proteins in same PDB: d4kxka_, d4kxkc_
        automated match to d2j9qa_
        complexed with bme, so4
      2. 2339895Domain d4kxkd_: 4kxk D: [261084]
        Other proteins in same PDB: d4kxka_, d4kxkc_
        automated match to d2j9qa_
        complexed with bme, so4
    11. Domains for 4kyo:
      1. 2339884Domain d4kyob_: 4kyo B: [261085]
        Other proteins in same PDB: d4kyoa_, d4kyoc_
        automated match to d2j9qa_
        complexed with bme, btb, so4
      2. 2339885Domain d4kyod_: 4kyo D: [261086]
        Other proteins in same PDB: d4kyoa_, d4kyoc_
        automated match to d2j9qa_
        complexed with bme, btb, so4
    12. Domain for 6evl:
    13. Domains for 6s2k:
      1. 2339896Domain d6s2ka2: 6s2k A:233-523 [400192]
        Other proteins in same PDB: d6s2ka1, d6s2kb1
        automated match to d3u84b2
        complexed with ktq
      2. 2339897Domain d6s2kb2: 6s2k B:233-523 [400212]
        Other proteins in same PDB: d6s2ka1, d6s2kb1
        automated match to d3u84b2
        complexed with ktq
  5. 2339898Yersinia enterocolitica [TaxId:630] [161324] (1 PDB entry)

More info for Protein automated matches from a.118.8.1: Tetratricopeptide repeat (TPR)

Timeline for Protein automated matches from a.118.8.1: Tetratricopeptide repeat (TPR):