SCOP 1.73: Domain d1ya0b1: 1ya0 B:1-497

Lineage for d1ya0b1 (1ya0 B:1-497)

1. Root: SCOP 1.73

2. Class a: All alpha proteins [46456] (258 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (23 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.8: TPR-like [48452] (4 families)

5. Family a.118.8.1: Tetratricopeptide repeat (TPR) [48453] (17 proteins)
   this is a repeat family; one repeat unit is 1zb1 A:166-231 found in domain

6. Protein SMG-7 [140843] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [140844] (1 PDB entry)

8. Domain d1ya0b1: 1ya0 B:1-497 [122786]
   automatically matched to 1YA0 A:1-497
   complexed with so4

Details for d1ya0b1

PDB Entry: 1ya0, 2.55 Å

PDB Description: Crystal structure of the N-terminal domain of human SMG7

PDB Compounds: (B:) SMG-7 transcript variant 2

SCOP Domain Sequences for d1ya0b1:

Sequence, based on SEQRES records:

>d1ya0b1 a.118.8.1 (B:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
mslqsaqylrqaevlkadmtdsklgpaevwtsrqalqdlyqkmlvtdleyaldkkveqdl
wnhafknqittlqgqaknranpnrsevqanlslfleaasgfytqllqelctvfnvdlpcr
vkssqlgiisnkqthtsaivkpqssscsyicqhclvhlgdiaryrnqtsqaesyyrhaaq
lvpsngqpynqlailasskgdhlttifyycrsiavkfpfpaastnlqkalskalesrdev
ktkwgvsdfikafikfhghvylsksleklsplrekleeqfkellfqkafnsqqlvhvtvi
nlfqlhhlrdfsneteqhtysqdeqlcwtqllalfmsflgilckcplqnesqeesynayp
lpavkvsmdwlrlrprvfqeavvderqyiwpwlisllnsfhpheedlssisatplpeefe
lqgflalrpsfrnldfskghqgitgdkegqqrrirqqrlisigkwiadnqprliqcenev
gkllfiteipeliledp

Sequence, based on observed residues (ATOM records):

>d1ya0b1 a.118.8.1 (B:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
mslqsaqylrqaevlkadmtdsklgpaevwtsrqalqdlyqkmlvtdleyaldkkveqdl
wnhafknqittlqgqaknranpnrsevqanlslfleaasgfytqllqelctvfnvdlpcp
qssscsyicqhclvhlgdiaryrnqtsqaesyyrhaaqlvpsngqpynqlailasskgdh
lttifyycrsiavkfpfpaastnlqkalskalesrdevktkwgvsdfikafikfhghvyl
sksleklsplrekleeqfkellfqkafnsqqlvhvtvinlfqlhhlrdfsneteqhtysq
deqlcwtqllalfmsflgilckcplqneesynayplpavkvsmdwlrlrprvfqeavvde
rqyiwpwlisllnsfhpheedlssisatplpeefelqgflalrpsfrnldfskkegqqrr
irqqrlisigkwiadnqprliqcenevgkllfiteipeliledp

Timeline for d1ya0b1:

• d1ya0b1 is new in SCOP 1.73
  
• d1ya0b1 appears in SCOP 1.75
  
• d1ya0b1 appears in the current release, SCOPe 2.08, called d1ya0b_