SCOPe 2.08: Domain d1vrbd_: 1vrb D:

Lineage for d1vrbd_ (1vrb D:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
   one turn of helix is made by two pairs of antiparallel strands linked with short turns
   has appearance of a sandwich of distinct architecture and jelly-roll topology

4. Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families)
   Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold

5. Family b.82.2.11: Asparaginyl hydroxylase-like [141633] (1 protein)
   Pfam PF08007

6. Protein Putative asparaginyl hydroxylase YxbC [141634] (1 species)

7. Species Bacillus subtilis [TaxId:1423] [141635] (1 PDB entry)
   Uniprot P46327 8-326

8. Domain d1vrbd_: 1vrb D: [120453]
   automated match to d1vrba1
   complexed with fe

Details for d1vrbd_

PDB Entry: 1vrb, 2.6 Å

PDB Description: Crystal structure of Putative asparaginyl hydroxylase (2636534) from Bacillus subtilis at 2.60 A resolution

PDB Compounds: (D:) Putative asparaginyl hydroxylase

SCOPe Domain Sequences for d1vrbd_:

Sequence, based on SEQRES records:

>d1vrbd_ b.82.2.11 (D:) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}
svlesiispvtmsefleeywpvkplvargeverftsipgfekvrtlenvlaiynnpvmvv
gdavieesegitdrflvspaealewyekgaalefdftdlfipqvrrwieklkaelrlpag
tsskaivyaakngggfkahfdaytnlifqiqgektwklaknenvsnpmqhydlseapyyp
ddlqsywkgdppkedlpdaeivnltpgtmlylprglwhstksdqatlalnitfgqpawld
lmlaalrkklisdnrfrelavnhqslhesskselngylesliqtlsenaetltpeqifqs
qdsdfdpyqstqlvfrqllt

Sequence, based on observed residues (ATOM records):

>d1vrbd_ b.82.2.11 (D:) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}
svlesiispvtmsefleeywpvkplvargeverftsipgfekvrtlenvlaiynnpvmvv
gdavieesdrflvspaealewyekgaalefdftdlfipqvrrwieklkaelrlpagtssk
aivyaakngggfkahfdaytnlifqiqgektwklaknenvsnpmqhydlseapyypddlq
sywkgdppkedlpdaeivnltpgtmlylprglwhstksdqatlalnitfgqpawldlmla
alrkklisdnrfrelavnhqesskselngylesliqtlsenaetltpeqifqsqdsdfdp
yqstqlvfrqllt

Timeline for d1vrbd_:

• d1vrbd_ first appeared in SCOP 1.73, called d1vrbd1
  
• d1vrbd_ appears in SCOPe 2.07