SCOPe 2.08: Structural Classification of Proteins — extended

PDB entry 5gzo

View 5gzo on RCSB PDB site
Description: Structure of neutralizing antibody bound to Zika envelope protein
Class: viral protein/immune system
Keywords: Zika virus, Human neutralizing antibodies, Envelope protein, Molecular determinants, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2016-09-29, released 2017-01-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-08-30, with a file datestamp of 2017-08-25.
Experiment type: XRAY
Resolution: 2.76 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Genome polyprotein
Species: Zika virus [TaxId:64320]
Database cross-references and differences (RAF-indexed):
- Uniprot H9A910 (0-End)
Domains in SCOPe 2.08: d5gzoa1, d5gzoa2
Chain 'B':
Compound: Genome polyprotein
Species: Zika virus [TaxId:64320]
Database cross-references and differences (RAF-indexed):
- Uniprot H9A910 (0-End)
Domains in SCOPe 2.08: d5gzob1, d5gzob2
Chain 'C':
Compound: antibody heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 5GZO (0-End)
Domains in SCOPe 2.08: d5gzoc1, d5gzoc2
Chain 'D':
Compound: Antibody Light Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 5GZO (0-End)
Domains in SCOPe 2.08: d5gzod1, d5gzod2
Chain 'H':
Compound: antibody heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 5GZO (0-End)
Domains in SCOPe 2.08: d5gzoh1, d5gzoh2
Chain 'L':
Compound: Antibody Light Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 5GZO (0-End)
Domains in SCOPe 2.08: d5gzol1, d5gzol2

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>5gzoA (A:)
ircigvsnrdfvegmsggtwvdvvlehggcvtvmaqdkptvdielvtttvsnmaevrsyc
yeasisdmasdsrcptqgeayldkqsdtqyvckrtlvdrgwgngcglfgkgslvtcakfa
cskkmtgksiqpenleyrimlsvhgsqhsgmivndtghetdenrakveitpnspraeatl
ggfgslgldceprtgldfsdlyyltmnnkhwlvhkewfhdiplpwhagadtgtphwnnke
alvefkdahakrqtvvvlgsqegavhtalagaleaemdgakgrlssghlkcrlkmdklrl
kgvsyslctaaftftkipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrlit
anpvitestenskmmleldppfgdsyivigvgekkithhwhrsgstigk

Sequence, based on observed residues (ATOM records): (download)

>5gzoA (A:)
ircigvsnrdfvegmsggtwvdvvlehggcvtvmaqdkptvdielvtttvsnmaevrsyc
yeasisdmasdsrcptqgeayldkqsdtqyvckrtlvdrgwgngcglfgkgslvtcakfa
cskkmtgksiqpenleyrimlsvhgsenrakveitpnspraeatlggfgslgldceprtg
ldfsdlyyltmnnkhwlvhkewfhdiplpwhagadtgtphwnnkealvefkdahakrqtv
vvlgsqegavhtalagaleaemdgakgrlssghlkcrlkmdklrlkgvsyslctaaftft
kipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrlitanpvitestenskmm
leldppfgdsyivigvgekkithhwhrsgs

Chain 'B':
Sequence, based on SEQRES records: (download)

>5gzoB (B:)
ircigvsnrdfvegmsggtwvdvvlehggcvtvmaqdkptvdielvtttvsnmaevrsyc
yeasisdmasdsrcptqgeayldkqsdtqyvckrtlvdrgwgngcglfgkgslvtcakfa
cskkmtgksiqpenleyrimlsvhgsqhsgmivndtghetdenrakveitpnspraeatl
ggfgslgldceprtgldfsdlyyltmnnkhwlvhkewfhdiplpwhagadtgtphwnnke
alvefkdahakrqtvvvlgsqegavhtalagaleaemdgakgrlssghlkcrlkmdklrl
kgvsyslctaaftftkipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrlit
anpvitestenskmmleldppfgdsyivigvgekkithhwhrsgstigk

Sequence, based on observed residues (ATOM records): (download)

>5gzoB (B:)
ircigvsnrdfvegmsggtwvdvvlehggcvtvmaqdkptvdielvtttvsnmaevrsyc
yeasisdmasdsrcptqgeayldkqsdtqyvckrtlvdrgwgngcglfgkgslvtcakfa
cskkmtgksiqpenleyrimlsvhgsenrakveitpnspraeatlggfgslgldceprtg
ldfsdlyyltmnnkhwlvhkewfhdiplpwhagadtgtphwnnkealvefkdahakrqtv
vvlgsqegavhtalagaleaemdgakgrlssghlkcrlkmdklrlkgvsyslctaaftft
kipaetlhgtvtvevqyagtdgpckvpaqmavdmqtltpvgrlitanpvitestenskmm
leldppfgdsyivigvgekkithhwhrsgs

Chain 'C':
Sequence, based on SEQRES records: (download)

>5gzoC (C:)
qvqlqesgpglvkpsgtlsltcavsggsisssnwwswvrqppgkglewigeiyhsgstny
npslksrvtisvdksknqfslklssvtaadtavyycardrddlspfdywgqgtlvtvssa
stkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssg
lyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk

Sequence, based on observed residues (ATOM records): (download)

>5gzoC (C:)
qvqlqesgpglvkpsgtlsltcavsggsisssnwwswvrqppgkglewigeiyhsgstny
npslksrvtisvdksknqfslklssvtaadtavyycardrddlspfdywgqgtlvtvssa
stkgpsvfplapssgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglysls
svvtvpssslgtqtyicnvnhkpsntkvdkrvep

Chain 'D':
Sequence, based on SEQRES records: (download)

>5gzoD (D:)
divmtqspsslsasvgdrvtitcrasqgirndlgwyqqkpgkapkrliyaasslqsgvps
rfsgsgsgteftltisslqpedfatyyclqhnsyprtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgecs

Sequence, based on observed residues (ATOM records): (download)

>5gzoD (D:)
divmtqspsslsasvgdrvtitcrasqgirndlgwyqqkpgkapkrliyaasslqsgvps
rfsgsgsgteftltisslqpedfatyyclqhnsyprtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrge

Chain 'H':
Sequence, based on SEQRES records: (download)

>5gzoH (H:)
qvqlqesgpglvkpsgtlsltcavsggsisssnwwswvrqppgkglewigeiyhsgstny
npslksrvtisvdksknqfslklssvtaadtavyycardrddlspfdywgqgtlvtvssa
stkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssg
lyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk

Sequence, based on observed residues (ATOM records): (download)

>5gzoH (H:)
qvqlqesgpglvkpsgtlsltcavsggsisssnwwswvrqppgkglewigeiyhsgstny
npslksrvtisvdksknqfslklssvtaadtavyycardrddlspfdywgqgtlvtvssa
stkgpsvfplapssgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglysls
svvtvpssslgtqtyicnvnhkpsntkvdkrvep

Chain 'L':
Sequence, based on SEQRES records: (download)

>5gzoL (L:)
divmtqspsslsasvgdrvtitcrasqgirndlgwyqqkpgkapkrliyaasslqsgvps
rfsgsgsgteftltisslqpedfatyyclqhnsyprtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgecs

Sequence, based on observed residues (ATOM records): (download)

>5gzoL (L:)
divmtqspsslsasvgdrvtitcrasqgirndlgwyqqkpgkapkrliyaasslqsgvps
rfsgsgsgteftltisslqpedfatyyclqhnsyprtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrge