PDB entry 3c2w

View 3c2w on RCSB PDB site
Description: Crystal structure of the photosensory core domain of P. aeruginosa bacteriophytochrome PaBphP in the Pfr state
Class: signaling protein
Keywords: Knot structure, Chromophore, Kinase, Phosphoprotein, Photoreceptor protein, Receptor, Sensory transduction, Transferase, SIGNALING PROTEIN
Deposited on 2008-01-25, released 2008-09-23
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-06-19, with a file datestamp of 2013-06-14.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.222
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Bacteriophytochrome
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: bphP, PA4117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3c2wa1, d3c2wa2, d3c2wa3
  • Chain 'B':
    Compound: Bacteriophytochrome
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: bphP, PA4117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3c2wb1, d3c2wb2, d3c2wb3
  • Chain 'C':
    Compound: Bacteriophytochrome
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: bphP, PA4117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3c2wc1, d3c2wc2, d3c2wc3
  • Chain 'D':
    Compound: Bacteriophytochrome
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: bphP, PA4117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3c2wd1, d3c2wd2, d3c2wd3
  • Chain 'E':
    Compound: Bacteriophytochrome
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: bphP, PA4117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3c2we1, d3c2we2, d3c2we3
  • Chain 'F':
    Compound: Bacteriophytochrome
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: bphP, PA4117
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9HWR3 (Start-496)
      • expression tag (497)
    Domains in SCOPe 2.07: d3c2wf1, d3c2wf2, d3c2wf3, d3c2wf4
  • Chain 'G':
    Compound: Bacteriophytochrome
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: bphP, PA4117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3c2wg1, d3c2wg2, d3c2wg3
  • Chain 'H':
    Compound: Bacteriophytochrome
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: bphP, PA4117
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3c2wh1, d3c2wh2, d3c2wh3
  • Heterogens: BLA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3c2wA (A:)
    mtsitpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsylt
    qeqvgpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtadtlsi
    tsftlnaqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrre
    dlesylgqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvl
    rsvspihceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcs
    aiverleqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlg
    grtlsirgdferqagnvlqrlqrdperdiyhtdnwpqpsedspdggdccgvlairfhrqe
    sgwifwfrheevhrirwggkpeklltigpsgprltprgsfeaweevvrghstpwsetdla
    iaeklrldlmelclnhalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3c2wA (A:)
    tpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsyltqeqv
    gpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtadtlsitsft
    lnaqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrredles
    ylgqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvlrsvs
    pihceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcsaive
    rleqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlggrtl
    sirgdferqagnvlqrlqrdperdiyhtdnwccgvlairfhrqesgwifwfrheevhrir
    wggkpeklltigpsgprltprgsfeaweevvrghstpwsetdlaiaeklrldlmelcl
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3c2wB (B:)
    mtsitpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsylt
    qeqvgpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtadtlsi
    tsftlnaqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrre
    dlesylgqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvl
    rsvspihceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcs
    aiverleqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlg
    grtlsirgdferqagnvlqrlqrdperdiyhtdnwpqpsedspdggdccgvlairfhrqe
    sgwifwfrheevhrirwggkpeklltigpsgprltprgsfeaweevvrghstpwsetdla
    iaeklrldlmelclnhalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3c2wB (B:)
    tpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsyltqeqv
    gpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtadtlsitsft
    lnaqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrredles
    ylgqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvlrsvs
    pihceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcsaive
    rleqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlggrtl
    sirgdferqagnvlqrlqrdperdiyhtdnwccgvlairfhrqesgwifwfrheevtigp
    sgprltprgsfeaweevvrghstpwsetdlaiaeklrldlmelclnha
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3c2wC (C:)
    mtsitpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsylt
    qeqvgpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtadtlsi
    tsftlnaqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrre
    dlesylgqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvl
    rsvspihceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcs
    aiverleqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlg
    grtlsirgdferqagnvlqrlqrdperdiyhtdnwpqpsedspdggdccgvlairfhrqe
    sgwifwfrheevhrirwggkpeklltigpsgprltprgsfeaweevvrghstpwsetdla
    iaeklrldlmelclnhalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3c2wC (C:)
    tpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsyltqeqv
    gpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtadtlsitsft
    lnaqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrredles
    ylgqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvlrsvs
    pihceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcsaive
    rleqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlggrtl
    sirgdferqagnvlqrlqrdperdiyhtdnwgdccgvlairfhrqesgwifwfrheevhr
    irwggkpeklltigpsgprltprgsfeaweevvrghstpwsetdlaiaeklrldlmelcl
    nh
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3c2wD (D:)
    mtsitpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsylt
    qeqvgpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtadtlsi
    tsftlnaqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrre
    dlesylgqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvl
    rsvspihceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcs
    aiverleqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlg
    grtlsirgdferqagnvlqrlqrdperdiyhtdnwpqpsedspdggdccgvlairfhrqe
    sgwifwfrheevhrirwggkpeklltigpsgprltprgsfeaweevvrghstpwsetdla
    iaeklrldlmelclnhalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3c2wD (D:)
    tpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsyltqeqv
    gpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtadtlsitsft
    lnaqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrredles
    ylgqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvlrsvs
    pihceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcsaive
    rleqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlggrtl
    sirgdferqagnvlqrlqrdperdiyhtdnwdccgvlairfhrqesgwifwfrheevhri
    rwgeklltigpsgprltprgsfeaweevvrghstpwsetdlaiaeklrldlmelclnh
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3c2wE (E:)
    mtsitpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsylt
    qeqvgpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtadtlsi
    tsftlnaqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrre
    dlesylgqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvl
    rsvspihceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcs
    aiverleqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlg
    grtlsirgdferqagnvlqrlqrdperdiyhtdnwpqpsedspdggdccgvlairfhrqe
    sgwifwfrheevhrirwggkpeklltigpsgprltprgsfeaweevvrghstpwsetdla
    iaeklrldlmelclnhalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3c2wE (E:)
    tpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsyltqeqv
    gpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtalsitsftln
    aqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrredlesyl
    gqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvlrsvspi
    hceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcsaiverl
    eqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlggrtlsi
    rgdferqagnvlqrlqrdperdiyhtdnwccgvlairfhrqesgwifwfrheevhrirwg
    gtigpsgprltprgsfeaweevvrghstpwsetdlaiaeklrldlmelcln
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3c2wF (F:)
    mtsitpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsylt
    qeqvgpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtadtlsi
    tsftlnaqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrre
    dlesylgqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvl
    rsvspihceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcs
    aiverleqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlg
    grtlsirgdferqagnvlqrlqrdperdiyhtdnwpqpsedspdggdccgvlairfhrqe
    sgwifwfrheevhrirwggkpeklltigpsgprltprgsfeaweevvrghstpwsetdla
    iaeklrldlmelclnhalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3c2wF (F:)
    tpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsyltqeqv
    gpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirttlsitsftln
    aqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrredlesyl
    gqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvlrsvspi
    hceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcsaiverl
    eqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlggrtlsi
    rgdferqagnvlqrlqrdperdiyhtdnwdccgvlairfhrqesgwifwfrheevltigp
    sgprltprgsfeaweevvrghstpwsetdlaiaeklrldlmelclnhal
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3c2wG (G:)
    mtsitpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsylt
    qeqvgpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtadtlsi
    tsftlnaqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrre
    dlesylgqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvl
    rsvspihceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcs
    aiverleqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlg
    grtlsirgdferqagnvlqrlqrdperdiyhtdnwpqpsedspdggdccgvlairfhrqe
    sgwifwfrheevhrirwggkpeklltigpsgprltprgsfeaweevvrghstpwsetdla
    iaeklrldlmelclnhalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3c2wG (G:)
    tpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsyltqeqv
    gpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtadtlsitsft
    lnaqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrredles
    ylgqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvlrsvs
    pihceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcsaive
    rleqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlggrtl
    sirgdferqagnvlqrlqrdperdiyhtdnwdccgvlairfhrqesgwifwfrheevhri
    rwggkpeklltigpsgprltprgsfeaweevvrghstpwsetdlaiaeklrldlmelcln
    ha
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3c2wH (H:)
    mtsitpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsylt
    qeqvgpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtadtlsi
    tsftlnaqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrre
    dlesylgqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvl
    rsvspihceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcs
    aiverleqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlg
    grtlsirgdferqagnvlqrlqrdperdiyhtdnwpqpsedspdggdccgvlairfhrqe
    sgwifwfrheevhrirwggkpeklltigpsgprltprgsfeaweevvrghstpwsetdla
    iaeklrldlmelclnhalehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3c2wH (H:)
    tpvtlancedepihvpgaiqphgalvtlradgmvlaaseniqallgfvaspgsyltqeqv
    gpevlrmleegltgngpwsnsvetrigehlfdvighsykevfylefeirtadtlsitsft
    lnaqriiaqvqlhndtasllsnvtdelrrmtgydrvmayrfrhddsgevvaesrredles
    ylgqrypasdipaqarrlyiqnpirliadvaytpmrvfpalnpetnesfdlsysvlrsvs
    pihceyltnmgvrasmsisivvggklwglfschhmspklipypvrmsfqifsqvcsaive
    rleqgriaellrvsterrlalarrardaddlfgalahpddgiaalipcdgalvmlggrtl
    sirgdferqagnvlqrlqrdperdiyhtdnwccgvlairfhrqesgwifwfrheevhrir
    wggkpeklltigpsgprltprgsfeaweevvrghstpwsetdlaiaeklrldlmelclnh