SCOPe 2.06: Protein: Membrane fusion ATPase VCP/p97

Lineage for Protein: Membrane fusion ATPase VCP/p97

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families)
division into families based on beta-sheet topologies
Family c.37.1.20: Extended AAA-ATPase domain [81269] (29 proteins)
fold is similar to that of RecA, but lacks the last two strands, followed by a family-specific Arg-finger domain
Protein Membrane fusion ATPase VCP/p97 [64038] (2 species)

Species:

Homo sapiens [TaxId:9606] [313486] (4 PDB entries)

Domain for 5dyg:
- Domain d5dyga3: 5dyg A:201-460 [313487]
  Other proteins in same PDB: d5dyga1, d5dyga2
  automated match to d1e32a2
  complexed with adp; mutant

Domains for 5ftj:

Domain d5ftja3: 5ftj A:201-470 [314513]
Other proteins in same PDB: d5ftja1, d5ftja2, d5ftjb1, d5ftjb2, d5ftjc1, d5ftjc2, d5ftjd1, d5ftjd2, d5ftje1, d5ftje2, d5ftjf1, d5ftjf2
automated match to d3cf1a2
complexed with adp, oja

Domain d5ftja4: 5ftj A:471-763 [314514]
Other proteins in same PDB: d5ftja1, d5ftja2, d5ftjb1, d5ftjb2, d5ftjc1, d5ftjc2, d5ftjd1, d5ftjd2, d5ftje1, d5ftje2, d5ftjf1, d5ftjf2
automated match to d3cf1a3
complexed with adp, oja

Domain d5ftjb3: 5ftj B:201-470 [314531]
Other proteins in same PDB: d5ftja1, d5ftja2, d5ftjb1, d5ftjb2, d5ftjc1, d5ftjc2, d5ftjd1, d5ftjd2, d5ftje1, d5ftje2, d5ftjf1, d5ftjf2
automated match to d3cf1a2
complexed with adp, oja

Domain d5ftjb4: 5ftj B:471-763 [314532]
Other proteins in same PDB: d5ftja1, d5ftja2, d5ftjb1, d5ftjb2, d5ftjc1, d5ftjc2, d5ftjd1, d5ftjd2, d5ftje1, d5ftje2, d5ftjf1, d5ftjf2
automated match to d3cf1a3
complexed with adp, oja

Domain d5ftjc3: 5ftj C:201-470 [314602]
Other proteins in same PDB: d5ftja1, d5ftja2, d5ftjb1, d5ftjb2, d5ftjc1, d5ftjc2, d5ftjd1, d5ftjd2, d5ftje1, d5ftje2, d5ftjf1, d5ftjf2
automated match to d3cf1a2
complexed with adp, oja

Domain d5ftjc4: 5ftj C:471-763 [314603]
Other proteins in same PDB: d5ftja1, d5ftja2, d5ftjb1, d5ftjb2, d5ftjc1, d5ftjc2, d5ftjd1, d5ftjd2, d5ftje1, d5ftje2, d5ftjf1, d5ftjf2
automated match to d3cf1a3
complexed with adp, oja

Domain d5ftjd3: 5ftj D:201-470 [314597]
Other proteins in same PDB: d5ftja1, d5ftja2, d5ftjb1, d5ftjb2, d5ftjc1, d5ftjc2, d5ftjd1, d5ftjd2, d5ftje1, d5ftje2, d5ftjf1, d5ftjf2
automated match to d3cf1a2
complexed with adp, oja

Domain d5ftjd4: 5ftj D:471-763 [314598]
Other proteins in same PDB: d5ftja1, d5ftja2, d5ftjb1, d5ftjb2, d5ftjc1, d5ftjc2, d5ftjd1, d5ftjd2, d5ftje1, d5ftje2, d5ftjf1, d5ftjf2
automated match to d3cf1a3
complexed with adp, oja

Domain d5ftje3: 5ftj E:201-470 [315130]
Other proteins in same PDB: d5ftja1, d5ftja2, d5ftjb1, d5ftjb2, d5ftjc1, d5ftjc2, d5ftjd1, d5ftjd2, d5ftje1, d5ftje2, d5ftjf1, d5ftjf2
automated match to d3cf1a2
complexed with adp, oja

Domain d5ftje4: 5ftj E:471-763 [315131]
Other proteins in same PDB: d5ftja1, d5ftja2, d5ftjb1, d5ftjb2, d5ftjc1, d5ftjc2, d5ftjd1, d5ftjd2, d5ftje1, d5ftje2, d5ftjf1, d5ftjf2
automated match to d3cf1a3
complexed with adp, oja

Domain d5ftjf3: 5ftj F:201-470 [314567]
Other proteins in same PDB: d5ftja1, d5ftja2, d5ftjb1, d5ftjb2, d5ftjc1, d5ftjc2, d5ftjd1, d5ftjd2, d5ftje1, d5ftje2, d5ftjf1, d5ftjf2
automated match to d3cf1a2
complexed with adp, oja

Domain d5ftjf4: 5ftj F:471-763 [314568]
Other proteins in same PDB: d5ftja1, d5ftja2, d5ftjb1, d5ftjb2, d5ftjc1, d5ftjc2, d5ftjd1, d5ftjd2, d5ftje1, d5ftje2, d5ftjf1, d5ftjf2
automated match to d3cf1a3
complexed with adp, oja

Domains for 5ftk:

Domain d5ftka3: 5ftk A:201-470 [314576]
Other proteins in same PDB: d5ftka1, d5ftka2, d5ftkb1, d5ftkb2, d5ftkc1, d5ftkc2, d5ftkd1, d5ftkd2, d5ftke1, d5ftke2, d5ftkf1, d5ftkf2
automated match to d3cf1a2
complexed with adp

Domain d5ftka4: 5ftk A:471-763 [314577]
Other proteins in same PDB: d5ftka1, d5ftka2, d5ftkb1, d5ftkb2, d5ftkc1, d5ftkc2, d5ftkd1, d5ftkd2, d5ftke1, d5ftke2, d5ftkf1, d5ftkf2
automated match to d3cf1a3
complexed with adp

Domain d5ftkb3: 5ftk B:201-470 [314586]
Other proteins in same PDB: d5ftka1, d5ftka2, d5ftkb1, d5ftkb2, d5ftkc1, d5ftkc2, d5ftkd1, d5ftkd2, d5ftke1, d5ftke2, d5ftkf1, d5ftkf2
automated match to d3cf1a2
complexed with adp

Domain d5ftkb4: 5ftk B:471-763 [314587]
Other proteins in same PDB: d5ftka1, d5ftka2, d5ftkb1, d5ftkb2, d5ftkc1, d5ftkc2, d5ftkd1, d5ftkd2, d5ftke1, d5ftke2, d5ftkf1, d5ftkf2
automated match to d3cf1a3
complexed with adp

Domain d5ftkc3: 5ftk C:201-470 [314624]
Other proteins in same PDB: d5ftka1, d5ftka2, d5ftkb1, d5ftkb2, d5ftkc1, d5ftkc2, d5ftkd1, d5ftkd2, d5ftke1, d5ftke2, d5ftkf1, d5ftkf2
automated match to d3cf1a2
complexed with adp

Domain d5ftkc4: 5ftk C:471-763 [314625]
Other proteins in same PDB: d5ftka1, d5ftka2, d5ftkb1, d5ftkb2, d5ftkc1, d5ftkc2, d5ftkd1, d5ftkd2, d5ftke1, d5ftke2, d5ftkf1, d5ftkf2
automated match to d3cf1a3
complexed with adp

Domain d5ftkd3: 5ftk D:201-470 [314538]
Other proteins in same PDB: d5ftka1, d5ftka2, d5ftkb1, d5ftkb2, d5ftkc1, d5ftkc2, d5ftkd1, d5ftkd2, d5ftke1, d5ftke2, d5ftkf1, d5ftkf2
automated match to d3cf1a2
complexed with adp

Domain d5ftkd4: 5ftk D:471-763 [314539]
Other proteins in same PDB: d5ftka1, d5ftka2, d5ftkb1, d5ftkb2, d5ftkc1, d5ftkc2, d5ftkd1, d5ftkd2, d5ftke1, d5ftke2, d5ftkf1, d5ftkf2
automated match to d3cf1a3
complexed with adp

Domain d5ftke3: 5ftk E:201-470 [314550]
Other proteins in same PDB: d5ftka1, d5ftka2, d5ftkb1, d5ftkb2, d5ftkc1, d5ftkc2, d5ftkd1, d5ftkd2, d5ftke1, d5ftke2, d5ftkf1, d5ftkf2
automated match to d3cf1a2
complexed with adp

Domain d5ftke4: 5ftk E:471-763 [314551]
Other proteins in same PDB: d5ftka1, d5ftka2, d5ftkb1, d5ftkb2, d5ftkc1, d5ftkc2, d5ftkd1, d5ftkd2, d5ftke1, d5ftke2, d5ftkf1, d5ftkf2
automated match to d3cf1a3
complexed with adp

Domain d5ftkf3: 5ftk F:201-470 [314527]
Other proteins in same PDB: d5ftka1, d5ftka2, d5ftkb1, d5ftkb2, d5ftkc1, d5ftkc2, d5ftkd1, d5ftkd2, d5ftke1, d5ftke2, d5ftkf1, d5ftkf2
automated match to d3cf1a2
complexed with adp

Domain d5ftkf4: 5ftk F:471-763 [314528]
Other proteins in same PDB: d5ftka1, d5ftka2, d5ftkb1, d5ftkb2, d5ftkc1, d5ftkc2, d5ftkd1, d5ftkd2, d5ftke1, d5ftke2, d5ftkf1, d5ftkf2
automated match to d3cf1a3
complexed with adp

Domain for 5kiy:
- Domain d5kiya3: 5kiy A:201-460 [343035]
  Other proteins in same PDB: d5kiya1, d5kiya2, d5kiya4
  automated match to d1e32a2
  complexed with anp, mg

Mouse (Mus musculus) [TaxId:10090] [64039] (4 PDB entries)

Domain for 1e32:
- Domain d1e32a2: 1e32 A:201-458 [59184]
  Other proteins in same PDB: d1e32a1, d1e32a3
  D1 domain from the N-D1 fragment
  complexed with adp
Domains for 1r7r:
1. Domain d1r7ra2: 1r7r A:201-470 [97204]
  Other proteins in same PDB: d1r7ra1, d1r7ra4
  complexed with adp
2. Domain d1r7ra3: 1r7r A:471-735 [97205]
  Other proteins in same PDB: d1r7ra1, d1r7ra4
  complexed with adp

Domains for 1s3s:

Domain d1s3sa2: 1s3s A:201-458 [98440]
Other proteins in same PDB: d1s3sa1, d1s3sa3, d1s3sb1, d1s3sb3, d1s3sc1, d1s3sc3, d1s3sd1, d1s3sd3, d1s3se1, d1s3se3, d1s3sf1, d1s3sf3, d1s3sg_, d1s3sh_, d1s3si_
D1 domain from the N-D1 fragment
complexed with adp

Domain d1s3sb2: 1s3s B:201-458 [98443]
Other proteins in same PDB: d1s3sa1, d1s3sa3, d1s3sb1, d1s3sb3, d1s3sc1, d1s3sc3, d1s3sd1, d1s3sd3, d1s3se1, d1s3se3, d1s3sf1, d1s3sf3, d1s3sg_, d1s3sh_, d1s3si_
D1 domain from the N-D1 fragment
complexed with adp

Domain d1s3sc2: 1s3s C:201-458 [98446]
Other proteins in same PDB: d1s3sa1, d1s3sa3, d1s3sb1, d1s3sb3, d1s3sc1, d1s3sc3, d1s3sd1, d1s3sd3, d1s3se1, d1s3se3, d1s3sf1, d1s3sf3, d1s3sg_, d1s3sh_, d1s3si_
D1 domain from the N-D1 fragment
complexed with adp

Domain d1s3sd2: 1s3s D:201-458 [98449]
Other proteins in same PDB: d1s3sa1, d1s3sa3, d1s3sb1, d1s3sb3, d1s3sc1, d1s3sc3, d1s3sd1, d1s3sd3, d1s3se1, d1s3se3, d1s3sf1, d1s3sf3, d1s3sg_, d1s3sh_, d1s3si_
D1 domain from the N-D1 fragment
complexed with adp

Domain d1s3se2: 1s3s E:201-458 [98452]
Other proteins in same PDB: d1s3sa1, d1s3sa3, d1s3sb1, d1s3sb3, d1s3sc1, d1s3sc3, d1s3sd1, d1s3sd3, d1s3se1, d1s3se3, d1s3sf1, d1s3sf3, d1s3sg_, d1s3sh_, d1s3si_
D1 domain from the N-D1 fragment
complexed with adp

Domain d1s3sf2: 1s3s F:201-458 [98455]
Other proteins in same PDB: d1s3sa1, d1s3sa3, d1s3sb1, d1s3sb3, d1s3sc1, d1s3sc3, d1s3sd1, d1s3sd3, d1s3se1, d1s3se3, d1s3sf1, d1s3sf3, d1s3sg_, d1s3sh_, d1s3si_
D1 domain from the N-D1 fragment
complexed with adp

Domains for 3cf1:
1. Domain d3cf1a2: 3cf1 A:201-470 [173177]
  Other proteins in same PDB: d3cf1a1, d3cf1a4, d3cf1b1, d3cf1b4, d3cf1c1, d3cf1c4
  complete low resolution structure
  complexed with adp, af3
2. Domain d3cf1a3: 3cf1 A:471-763 [173178]
  Other proteins in same PDB: d3cf1a1, d3cf1a4, d3cf1b1, d3cf1b4, d3cf1c1, d3cf1c4
  complete low resolution structure
  complexed with adp, af3
3. Domain d3cf1b2: 3cf1 B:201-470 [173181]
  Other proteins in same PDB: d3cf1a1, d3cf1a4, d3cf1b1, d3cf1b4, d3cf1c1, d3cf1c4
  complete low resolution structure
  complexed with adp, af3
4. Domain d3cf1b3: 3cf1 B:471-763 [173182]
  Other proteins in same PDB: d3cf1a1, d3cf1a4, d3cf1b1, d3cf1b4, d3cf1c1, d3cf1c4
  complete low resolution structure
  complexed with adp, af3
5. Domain d3cf1c2: 3cf1 C:201-470 [173185]
  Other proteins in same PDB: d3cf1a1, d3cf1a4, d3cf1b1, d3cf1b4, d3cf1c1, d3cf1c4
  complete low resolution structure
  complexed with adp, af3
6. Domain d3cf1c3: 3cf1 C:471-763 [173186]
  Other proteins in same PDB: d3cf1a1, d3cf1a4, d3cf1b1, d3cf1b4, d3cf1c1, d3cf1c4
  complete low resolution structure
  complexed with adp, af3

More info for Protein Membrane fusion ATPase VCP/p97 from c.37.1.20: Extended AAA-ATPase domain

Timeline for Protein Membrane fusion ATPase VCP/p97 from c.37.1.20: Extended AAA-ATPase domain:

Protein Membrane fusion ATPase VCP/p97 from c.37.1.20: Extended AAA-ATPase domain first appeared in SCOP 1.57, called Protein Membrane fusion atpase p97, D1 domain from c.37.1.13: Extended AAA-ATPase domain
Protein Membrane fusion ATPase VCP/p97 from c.37.1.20: Extended AAA-ATPase domain appears in SCOPe 2.05
Protein Membrane fusion ATPase VCP/p97 from c.37.1.20: Extended AAA-ATPase domain appears in SCOPe 2.07
Protein Membrane fusion ATPase VCP/p97 from c.37.1.20: Extended AAA-ATPase domain appears in the current release, SCOPe 2.08