SCOPe 2.05: Protein: Methionyl-tRNA synthetase (MetRS), Zn-domain

Lineage for Protein: Methionyl-tRNA synthetase (MetRS), Zn-domain

Root: SCOPe 2.05
Class g: Small proteins [56992] (92 folds)
Fold g.41: Rubredoxin-like [57769] (17 superfamilies)
metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2
Superfamily g.41.1: Methionyl-tRNA synthetase (MetRS), Zn-domain [57770] (1 family)

Family g.41.1.1: Methionyl-tRNA synthetase (MetRS), Zn-domain [57771] (1 protein)
in the Pyrococcus abyssi MetRS structure there is a tandem repeat of two such domains swapped with their zinc-binding 'knuckles', this duplicated finger occupies a larger region (124-183) than defined below; there is a structurally equivalent region in the E. coli enzyme lacking the second zinc-binding site

Protein Methionyl-tRNA synthetase (MetRS), Zn-domain [57772] (2 species)

Species:

Escherichia coli [TaxId:562] [57773] (9 PDB entries)
1. Domain for 1f4l:
  - Domain d1f4la3: 1f4l A:141-175 [59650]
    Other proteins in same PDB: d1f4la1, d1f4la2
    protein/RNA complex; complexed with met, zn
2. Domain for 1mea:
  - Domain d1meaa_: 1mea A: [45176]
    complexed with zn
3. Domain for 1med:
  - Domain d1meda_: 1med A: [45177]
    complexed with zn
4. Domain for 1p7p:
  - Domain d1p7pa3: 1p7p A:141-175 [94311]
    Other proteins in same PDB: d1p7pa1, d1p7pa2
    protein/RNA complex; complexed with mph, zn
5. Domain for 1pfu:
  - Domain d1pfua3: 1pfu A:141-175 [94659]
    Other proteins in same PDB: d1pfua1, d1pfua2
    protein/RNA complex; complexed with mpj, zn
6. Domain for 1pfv:
  - Domain d1pfva3: 1pfv A:141-175 [94662]
    Other proteins in same PDB: d1pfva1, d1pfva2
    protein/RNA complex; complexed with 2fm, zn
7. Domain for 1pfw:
  - Domain d1pfwa3: 1pfw A:141-175 [94665]
    Other proteins in same PDB: d1pfwa1, d1pfwa2
    protein/RNA complex; complexed with mf3, zn
8. Domain for 1pfy:
  - Domain d1pfya3: 1pfy A:141-175 [94668]
    Other proteins in same PDB: d1pfya1, d1pfya2
    protein/RNA complex; complexed with msp, zn
9. Domain for 1qqt:
  - Domain d1qqta3: 1qqt A:141-175 [45175]
    Other proteins in same PDB: d1qqta1, d1qqta2
    complexed with zn
Pyrococcus abyssi [TaxId:29292] [111451] (1 PDB entry)
Uniprot Q9V011 1-606; C-domain 616-722 is solved separately: 1MKH
- Domain for 1rqg:
  - Domain d1rqga3: 1rqg A:139-173 [105065]
    Other proteins in same PDB: d1rqga1, d1rqga2
    complexed with zn

More info for Protein Methionyl-tRNA synthetase (MetRS), Zn-domain from g.41.1.1: Methionyl-tRNA synthetase (MetRS), Zn-domain

Timeline for Protein Methionyl-tRNA synthetase (MetRS), Zn-domain from g.41.1.1: Methionyl-tRNA synthetase (MetRS), Zn-domain:

Protein Methionyl-tRNA synthetase (MetRS), Zn-domain from g.41.1.1: Methionyl-tRNA synthetase (MetRS), Zn-domain first appeared (with stable ids) in SCOP 1.55
Protein Methionyl-tRNA synthetase (MetRS), Zn-domain from g.41.1.1: Methionyl-tRNA synthetase (MetRS), Zn-domain appears in SCOPe 2.04
Protein Methionyl-tRNA synthetase (MetRS), Zn-domain from g.41.1.1: Methionyl-tRNA synthetase (MetRS), Zn-domain appears in SCOPe 2.06
Protein Methionyl-tRNA synthetase (MetRS), Zn-domain from g.41.1.1: Methionyl-tRNA synthetase (MetRS), Zn-domain appears in the current release, SCOPe 2.08