SCOPe 2.08: Protein: Family B DNA polymerase

Lineage for Protein: Family B DNA polymerase

Root: SCOPe 2.08
Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
Family e.8.1.1: DNA polymerase I [56673] (5 proteins)
in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain
Protein Family B DNA polymerase [56680] (7 species)

Species:

Bacteriophage RB69 [TaxId:12353] [56681] (93 PDB entries)
1. Domain for 1clq:
  - Domain d1clqa2: 1clq A:376-903 [43006]
    Other proteins in same PDB: d1clqa1
    protein/DNA complex; complexed with ca, gdp
2. Domain for 1ig9:
  - Domain d1ig9a2: 1ig9 A:376-901 [62368]
    Other proteins in same PDB: d1ig9a1
    protein/DNA complex; complexed with ca, ttp
3. Domain for 1ih7:
  - Domain d1ih7a2: 1ih7 A:376-903 [62376]
    Other proteins in same PDB: d1ih7a1
    complexed with gmp, k
4. Domains for 1q9x:
  1. Domain d1q9xa2: 1q9x A:376-903 [96329]
    Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
    protein/DNA complex; complexed with 3dr, ca, dgp, doc
  2. Domain d1q9xb2: 1q9x B:376-903 [96331]
    Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
    protein/DNA complex; complexed with 3dr, ca, dgp, doc
  3. Domain d1q9xc2: 1q9x C:376-903 [96333]
    Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
    protein/DNA complex; complexed with 3dr, ca, dgp, doc
  4. Domain d1q9xd2: 1q9x D:376-903 [96335]
    Other proteins in same PDB: d1q9xa1, d1q9xb1, d1q9xc1, d1q9xd1
    protein/DNA complex; complexed with 3dr, ca, dgp, doc
5. Domain for 1q9y:
  - Domain d1q9ya2: 1q9y A:376-902 [96337]
    Other proteins in same PDB: d1q9ya1, d1q9ya3
    protein/DNA complex; complexed with ca, dcp
6. Domains for 1rv2:
  1. Domain d1rv2a4: 1rv2 A:376-902 [407912]
    Other proteins in same PDB: d1rv2a3, d1rv2b3, d1rv2c3, d1rv2d3
    automated match to d1q9xd2
    protein/DNA complex
  2. Domain d1rv2b4: 1rv2 B:376-901 [407914]
    Other proteins in same PDB: d1rv2a3, d1rv2b3, d1rv2c3, d1rv2d3
    automated match to d1ig9a2
    protein/DNA complex
  3. Domain d1rv2c4: 1rv2 C:376-898 [407916]
    Other proteins in same PDB: d1rv2a3, d1rv2b3, d1rv2c3, d1rv2d3
    automated match to d1ig9a2
    protein/DNA complex
  4. Domain d1rv2d4: 1rv2 D:376-896 [344513]
    Other proteins in same PDB: d1rv2a3, d1rv2b3, d1rv2c3, d1rv2d3
    automated match to d1ig9a2
    protein/DNA complex
7. Domains for 1waf:
  1. Domain d1wafa2: 1waf A:376-903 [43008]
    Other proteins in same PDB: d1wafa1, d1wafb1
    complexed with gmp
  2. Domain d1wafb2: 1waf B:376-903 [43009]
    Other proteins in same PDB: d1wafa1, d1wafb1
    complexed with gmp
8. Domain for 1waj:
  - Domain d1waja2: 1waj A:376-903 [43007]
    Other proteins in same PDB: d1waja1
    complexed with 5gp
9. Domain for 2atq:
  - Domain d2atqa2: 2atq A:376-903 [127304]
    Other proteins in same PDB: d2atqa1, d2atqb1
    automatically matched to d1clqa2
    protein/DNA complex; complexed with gdp, zn
10. Domains for 2dtu:
  1. Domain d2dtua2: 2dtu A:376-903 [230660]
    Other proteins in same PDB: d2dtua1, d2dtub1, d2dtuc1, d2dtud1
    automated match to d1ih7a2
    protein/DNA complex
  2. Domain d2dtub2: 2dtu B:376-903 [230665]
    Other proteins in same PDB: d2dtua1, d2dtub1, d2dtuc1, d2dtud1
    automated match to d1ih7a2
    protein/DNA complex
  3. Domain d2dtuc2: 2dtu C:376-899 [230668]
    Other proteins in same PDB: d2dtua1, d2dtub1, d2dtuc1, d2dtud1
    automated match to d1ih7a2
    protein/DNA complex
  4. Domain d2dtud2: 2dtu D:376-898 [230666]
    Other proteins in same PDB: d2dtua1, d2dtub1, d2dtuc1, d2dtud1
    automated match to d1ih7a2
    protein/DNA complex
11. Domains for 2dy4:
  1. Domain d2dy4a2: 2dy4 A:376-902 [131883]
    Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
    automated match to d1q9xa2
    protein/DNA complex
  2. Domain d2dy4b2: 2dy4 B:376-902 [131885]
    Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
    automated match to d1q9xa2
    protein/DNA complex
  3. Domain d2dy4c2: 2dy4 C:376-900 [131887]
    Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
    automated match to d1ig9a2
    protein/DNA complex
  4. Domain d2dy4d2: 2dy4 D:376-897 [131889]
    Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
    automated match to d1ig9a2
    protein/DNA complex
12. Domains for 2oyq:
  1. Domain d2oyqa2: 2oyq A:376-903 [149071]
    Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
    automated match to d2ozma2
    protein/DNA complex; complexed with mg, n5p
  2. Domain d2oyqb2: 2oyq B:376-899 [149073]
    Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
    protein/DNA complex; complexed with mg, n5p
  3. Domain d2oyqc2: 2oyq C:376-900 [149075]
    Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
    automated match to d1ig9a2
    protein/DNA complex; complexed with mg, n5p
  4. Domain d2oyqd2: 2oyq D:376-898 [149077]
    Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
    automated match to d1ig9a2
    protein/DNA complex; complexed with mg, n5p
13. Domain for 2ozm:
  - Domain d2ozma2: 2ozm A:376-903 [149116]
    Other proteins in same PDB: d2ozma1
    automated match to d1q9xa2
    protein/DNA complex; complexed with mg, n5p
14. Domain for 2ozs:
  - Domain d2ozsa2: 2ozs A:376-903 [149128]
    Other proteins in same PDB: d2ozsa1
    automated match to d1q9xa2
    protein/DNA complex; complexed with dtp, mg
15. Domains for 2p5g:
  1. Domain d2p5ga2: 2p5g A:376-903 [149241]
    Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1
    automated match to d1q9xa2
    protein/DNA complex
  2. Domain d2p5gb2: 2p5g B:376-899 [149243]
    Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1
    protein/DNA complex
  3. Domain d2p5gc2: 2p5g C:376-898 [149245]
    Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1
    automated match to d1ig9a2
    protein/DNA complex
  4. Domain d2p5gd2: 2p5g D:376-899 [149247]
    Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1
    automated match to d1ig9a2
    protein/DNA complex
16. Domains for 2p5o:
  1. Domain d2p5oa2: 2p5o A:376-902 [139499]
    Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
    automatically matched to d1clqa2
    protein/DNA complex
  2. Domain d2p5ob2: 2p5o B:376-901 [139501]
    Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
    automatically matched to d1clqa2
    protein/DNA complex
  3. Domain d2p5oc2: 2p5o C:376-898 [139503]
    Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
    automatically matched to d1clqa2
    protein/DNA complex
  4. Domain d2p5od2: 2p5o D:376-896 [139505]
    Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
    automatically matched to d1clqa2
    protein/DNA complex
17. Domain for 3cfo:
  - Domain d3cfoa2: 3cfo A:376-903 [231887]
    Other proteins in same PDB: d3cfoa1, d3cfoa3
    automated match to d1ih7a2
    complexed with gmp, so4; mutant
18. Domain for 3cq8:
  - Domain d3cq8a2: 3cq8 A:376-902 [156928]
    Other proteins in same PDB: d3cq8a1
    automated match to d4khqa2
    protein/DNA complex; complexed with ca, gol, na, ttp; mutant
19. Domains for 3l8b:
  1. Domain d3l8ba2: 3l8b A:376-903 [232822]
    Other proteins in same PDB: d3l8ba1, d3l8bb1
    automated match to d1ih7a2
    protein/DNA complex; complexed with so4
  2. Domain d3l8bb2: 3l8b B:376-903 [232823]
    Other proteins in same PDB: d3l8ba1, d3l8bb1
    automated match to d1ih7a2
    protein/DNA complex; complexed with so4
20. Domain for 3lds:
  - Domain d3ldsa2: 3lds A:376-903 [247451]
    Other proteins in same PDB: d3ldsa1
    automated match to d3ncia2
    protein/DNA complex; complexed with dtp, mn, so4
21. Domain for 3lzi:
  - Domain d3lzia2: 3lzi A:376-903 [232891]
    Other proteins in same PDB: d3lzia1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, dtp
22. Domain for 3lzj:
  - Domain d3lzja2: 3lzj A:376-903 [232890]
    Other proteins in same PDB: d3lzja1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, ctp
23. Domain for 3nae:
  - Domain d3naea2: 3nae A:376-903 [247870]
    Other proteins in same PDB: d3naea1
    automated match to d3lzja2
    protein/DNA complex; complexed with ca, dtp
24. Domain for 3nci:
  - Domain d3ncia2: 3nci A:376-903 [213878]
    Other proteins in same PDB: d3ncia1
    automated match to d1q9xa2
    protein/DNA complex; complexed with ca, dcp
25. Domain for 3ndk:
  - Domain d3ndka2: 3ndk A:376-903 [247888]
    Other proteins in same PDB: d3ndka1
    automated match to d3lzja2
    protein/DNA complex; complexed with ca, dcp
26. Domain for 3ne6:
  - Domain d3ne6a2: 3ne6 A:376-903 [233011]
    Other proteins in same PDB: d3ne6a1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, dcp
27. Domain for 3ngi:
  - Domain d3ngia2: 3ngi A:376-903 [247916]
    Other proteins in same PDB: d3ngia1
    automated match to d3lzja2
    protein/DNA complex; complexed with ca, ttp
28. Domain for 3nhg:
  - Domain d3nhga2: 3nhg A:376-903 [247934]
    Other proteins in same PDB: d3nhga1
    automated match to d3ne6a2
    protein/DNA complex; complexed with ca, ttp
29. Domain for 3qes:
  - Domain d3qesa2: 3qes A:376-902 [233321]
    Other proteins in same PDB: d3qesa1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, dgt
30. Domain for 3qet:
  - Domain d3qeta2: 3qet A:376-903 [233323]
    Other proteins in same PDB: d3qeta1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, ttp
31. Domains for 3rma:
  1. Domain d3rmaa2: 3rma A:376-903 [249141]
    Other proteins in same PDB: d3rmaa1, d3rmab1, d3rmac1, d3rmad1
    automated match to d3l8bb2
    protein/DNA complex
  2. Domain d3rmab2: 3rma B:376-903 [249143]
    Other proteins in same PDB: d3rmaa1, d3rmab1, d3rmac1, d3rmad1
    automated match to d3l8bb2
    protein/DNA complex
  3. Domain d3rmac2: 3rma C:376-899 [249145]
    Other proteins in same PDB: d3rmaa1, d3rmab1, d3rmac1, d3rmad1
    automated match to d3l8bb2
    protein/DNA complex
  4. Domain d3rmad2: 3rma D:376-898 [249147]
    Other proteins in same PDB: d3rmaa1, d3rmab1, d3rmac1, d3rmad1
    automated match to d3l8bb2
    protein/DNA complex
32. Domains for 3rmb:
  1. Domain d3rmba2: 3rmb A:376-903 [249149]
    Other proteins in same PDB: d3rmba1, d3rmbb1, d3rmbc1, d3rmbd1
    automated match to d3l8bb2
    protein/DNA complex; complexed with so4
  2. Domain d3rmbb2: 3rmb B:376-903 [249151]
    Other proteins in same PDB: d3rmba1, d3rmbb1, d3rmbc1, d3rmbd1
    automated match to d3l8bb2
    protein/DNA complex; complexed with so4
  3. Domain d3rmbc2: 3rmb C:376-900 [249153]
    Other proteins in same PDB: d3rmba1, d3rmbb1, d3rmbc1, d3rmbd1
    automated match to d3l8bb2
    protein/DNA complex; complexed with so4
  4. Domain d3rmbd2: 3rmb D:376-897 [249155]
    Other proteins in same PDB: d3rmba1, d3rmbb1, d3rmbc1, d3rmbd1
    automated match to d3l8bb2
    protein/DNA complex; complexed with so4
33. Domains for 3rmc:
  1. Domain d3rmca2: 3rmc A:376-902 [249157]
    Other proteins in same PDB: d3rmca1, d3rmcb1, d3rmcc1, d3rmcd1
    automated match to d3ncia2
    protein/DNA complex
  2. Domain d3rmcb2: 3rmc B:376-902 [249159]
    Other proteins in same PDB: d3rmca1, d3rmcb1, d3rmcc1, d3rmcd1
    automated match to d3ncia2
    protein/DNA complex
  3. Domain d3rmcc2: 3rmc C:376-901 [249161]
    Other proteins in same PDB: d3rmca1, d3rmcb1, d3rmcc1, d3rmcd1
    automated match to d3ncia2
    protein/DNA complex
  4. Domain d3rmcd2: 3rmc D:376-897 [249163]
    Other proteins in same PDB: d3rmca1, d3rmcb1, d3rmcc1, d3rmcd1
    automated match to d3ncia2
    protein/DNA complex
34. Domains for 3rmd:
  1. Domain d3rmda2: 3rmd A:376-902 [249165]
    Other proteins in same PDB: d3rmda1, d3rmdb1, d3rmdc1, d3rmdd1
    automated match to d3l8bb2
    protein/DNA complex; complexed with dtp
  2. Domain d3rmdb2: 3rmd B:376-902 [249167]
    Other proteins in same PDB: d3rmda1, d3rmdb1, d3rmdc1, d3rmdd1
    automated match to d3l8bb2
    protein/DNA complex; complexed with dtp
  3. Domain d3rmdc2: 3rmd C:376-901 [249169]
    Other proteins in same PDB: d3rmda1, d3rmdb1, d3rmdc1, d3rmdd1
    automated match to d3l8bb2
    protein/DNA complex; complexed with dtp
  4. Domain d3rmdd2: 3rmd D:376-897 [249171]
    Other proteins in same PDB: d3rmda1, d3rmdb1, d3rmdc1, d3rmdd1
    automated match to d3l8bb2
    protein/DNA complex; complexed with dtp
35. Domain for 3s9h:
  - Domain d3s9ha2: 3s9h A:376-903 [249317]
    Other proteins in same PDB: d3s9ha1
    automated match to d3qeta2
    protein/DNA complex; complexed with ca, dup; mutant
36. Domain for 3scx:
  - Domain d3scxa2: 3scx A:376-903 [233529]
    Other proteins in same PDB: d3scxa1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, dup; mutant
37. Domain for 3si6:
  - Domain d3si6a2: 3si6 A:376-903 [249475]
    Other proteins in same PDB: d3si6a1
    automated match to d3scxa2
    protein/DNA complex; complexed with dup, mg; mutant
38. Domain for 3sjj:
  - Domain d3sjja2: 3sjj A:376-901 [249487]
    Other proteins in same PDB: d3sjja1
    automated match to d3scxa2
    protein/DNA complex; complexed with dup, mn; mutant
39. Domain for 3snn:
  - Domain d3snna2: 3snn A:376-903 [249531]
    Other proteins in same PDB: d3snna1
    automated match to d3scxa2
    protein/DNA complex; complexed with dcp, mg
40. Domain for 3spy:
  - Domain d3spya2: 3spy A:376-901 [233590]
    Other proteins in same PDB: d3spya1
    automated match to d1ih7a2
    protein/DNA complex; complexed with mg, upc
41. Domain for 3spz:
  - Domain d3spza2: 3spz A:376-903 [233592]
    Other proteins in same PDB: d3spza1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, upc
42. Domain for 3sq0:
  - Domain d3sq0a2: 3sq0 A:376-903 [249551]
    Other proteins in same PDB: d3sq0a1
    automated match to d3qeta2
    protein/DNA complex; complexed with dup, mn
43. Domain for 3sq1:
  - Domain d3sq1a2: 3sq1 A:376-901 [233594]
    Other proteins in same PDB: d3sq1a1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, dup
44. Domain for 3sq2:
  - Domain d3sq2a2: 3sq2 A:376-902 [233596]
    Other proteins in same PDB: d3sq2a1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, ttp
45. Domain for 3sq4:
  - Domain d3sq4a2: 3sq4 A:376-902 [249553]
    Other proteins in same PDB: d3sq4a1
    automated match to d3sq2a2
    protein/DNA complex; complexed with ca, ttp
46. Domain for 3sun:
  - Domain d3suna2: 3sun A:376-895 [233639]
    Other proteins in same PDB: d3suna1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, ttp
47. Domain for 3suo:
  - Domain d3suoa2: 3suo A:376-900 [233641]
    Other proteins in same PDB: d3suoa1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, ttp
48. Domain for 3sup:
  - Domain d3supa2: 3sup A:376-903 [249579]
    Other proteins in same PDB: d3supa1
    automated match to d3lzja2
    protein/DNA complex; complexed with ca, dcp
49. Domain for 3suq:
  - Domain d3suqa2: 3suq A:376-897 [249581]
    Other proteins in same PDB: d3suqa1
    automated match to d3sq1a2
    protein/DNA complex; complexed with ca, dcp
50. Domains for 3tae:
  1. Domain d3taea2: 3tae A:376-903 [249842]
    Other proteins in same PDB: d3taea1, d3taeb1, d3taec1, d3taed1
    automated match to d3l8bb2
    protein/DNA complex; complexed with so4
  2. Domain d3taeb2: 3tae B:376-901 [249844]
    Other proteins in same PDB: d3taea1, d3taeb1, d3taec1, d3taed1
    automated match to d3l8bb2
    protein/DNA complex; complexed with so4
  3. Domain d3taec2: 3tae C:376-903 [249846]
    Other proteins in same PDB: d3taea1, d3taeb1, d3taec1, d3taed1
    automated match to d3l8bb2
    protein/DNA complex; complexed with so4
  4. Domain d3taed2: 3tae D:376-898 [249848]
    Other proteins in same PDB: d3taea1, d3taeb1, d3taec1, d3taed1
    automated match to d3l8bb2
    protein/DNA complex; complexed with so4
51. Domains for 3tag:
  1. Domain d3taga2: 3tag A:376-903 [249850]
    Other proteins in same PDB: d3taga1, d3taga3, d3tagb1, d3tagc1, d3tagd1
    automated match to d3l8bb2
    protein/DNA complex; complexed with so4
  2. Domain d3tagb2: 3tag B:376-901 [249852]
    Other proteins in same PDB: d3taga1, d3taga3, d3tagb1, d3tagc1, d3tagd1
    automated match to d3l8bb2
    protein/DNA complex; complexed with so4
  3. Domain d3tagc2: 3tag C:376-903 [249854]
    Other proteins in same PDB: d3taga1, d3taga3, d3tagb1, d3tagc1, d3tagd1
    automated match to d3l8bb2
    protein/DNA complex; complexed with so4
  4. Domain d3tagd2: 3tag D:376-898 [249856]
    Other proteins in same PDB: d3taga1, d3taga3, d3tagb1, d3tagc1, d3tagd1
    automated match to d3l8bb2
    protein/DNA complex; complexed with so4
52. Domain for 3uiq:
  - Domain d3uiqa2: 3uiq A:376-901 [217393]
    Other proteins in same PDB: d3uiqa1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, dup
53. Domain for 4dtj:
  - Domain d4dtja2: 4dtj A:376-901 [220020]
    Other proteins in same PDB: d4dtja1
    automated match to d1ig9a2
    protein/DNA complex; complexed with ca, ttp
54. Domain for 4dtm:
  - Domain d4dtma2: 4dtm A:376-901 [220022]
    Other proteins in same PDB: d4dtma1
    automated match to d1ig9a2
    protein/DNA complex; complexed with ca, dcp
55. Domain for 4dtn:
  - Domain d4dtna2: 4dtn A:376-903 [251551]
    Other proteins in same PDB: d4dtna1
    automated match to d3qeta2
    protein/DNA complex; complexed with ca, dtp
56. Domain for 4dto:
  - Domain d4dtoa2: 4dto A:376-903 [251553]
    Other proteins in same PDB: d4dtoa1
    automated match to d3qeta2
    protein/DNA complex; complexed with ca, dcp
57. Domain for 4dtp:
  - Domain d4dtpa2: 4dtp A:376-903 [251555]
    Other proteins in same PDB: d4dtpa1
    automated match to d3qeta2
    protein/DNA complex; complexed with ca, dgt
58. Domain for 4dtr:
  - Domain d4dtra2: 4dtr A:376-901 [251557]
    Other proteins in same PDB: d4dtra1
    automated match to d3qesa2
    protein/DNA complex; complexed with ca, dtp
59. Domain for 4dts:
  - Domain d4dtsa2: 4dts A:376-901 [251559]
    Other proteins in same PDB: d4dtsa1
    automated match to d3qesa2
    protein/DNA complex; complexed with ca, dcp
60. Domain for 4dtu:
  - Domain d4dtua2: 4dtu A:376-901 [251561]
    Other proteins in same PDB: d4dtua1
    automated match to d3qesa2
    protein/DNA complex; complexed with ca, dgt
61. Domain for 4dtx:
  - Domain d4dtxa2: 4dtx A:376-901 [251563]
    Other proteins in same PDB: d4dtxa1
    automated match to d3qesa2
    protein/DNA complex; complexed with ca, ttp
62. Domain for 4du1:
  - Domain d4du1a2: 4du1 A:376-901 [220028]
    Other proteins in same PDB: d4du1a1
    automated match to d1ig9a2
    protein/DNA complex; complexed with ca, dtp
63. Domain for 4du3:
  - Domain d4du3a2: 4du3 A:376-901 [220030]
    Other proteins in same PDB: d4du3a1
    automated match to d1ig9a2
    protein/DNA complex; complexed with ca, dtp
64. Domain for 4du4:
  - Domain d4du4a2: 4du4 A:376-902 [220032]
    Other proteins in same PDB: d4du4a1
    automated match to d1q9xa2
    protein/DNA complex; complexed with ca, dtp
65. Domain for 4e3s:
  - Domain d4e3sa2: 4e3s A:376-903 [251652]
    Other proteins in same PDB: d4e3sa1
    automated match to d3qeta2
    protein/DNA complex; complexed with ca, qtp
66. Domain for 4fj5:
  - Domain d4fj5a2: 4fj5 A:376-901 [251986]
    Other proteins in same PDB: d4fj5a1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, dtp
67. Domain for 4fj7:
  - Domain d4fj7a2: 4fj7 A:376-901 [251988]
    Other proteins in same PDB: d4fj7a1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, dgt
68. Domain for 4fj8:
  - Domain d4fj8a2: 4fj8 A:376-901 [251990]
    Other proteins in same PDB: d4fj8a1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, dcp
69. Domain for 4fj9:
  - Domain d4fj9a2: 4fj9 A:376-901 [251992]
    Other proteins in same PDB: d4fj9a1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, ttp
70. Domain for 4fjg:
  - Domain d4fjga2: 4fjg A:376-901 [251994]
    Other proteins in same PDB: d4fjga1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, dtp
71. Domain for 4fjh:
  - Domain d4fjha2: 4fjh A:376-901 [251996]
    Other proteins in same PDB: d4fjha1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, dgt
72. Domain for 4fji:
  - Domain d4fjia2: 4fji A:376-903 [251998]
    Other proteins in same PDB: d4fjia1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, dcp
73. Domain for 4fjj:
  - Domain d4fjja2: 4fjj A:376-901 [252000]
    Other proteins in same PDB: d4fjja1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, ttp
74. Domain for 4fjk:
  - Domain d4fjka2: 4fjk A:376-901 [252002]
    Other proteins in same PDB: d4fjka1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, dtp
75. Domain for 4fjl:
  - Domain d4fjla2: 4fjl A:376-901 [252004]
    Other proteins in same PDB: d4fjla1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, dgt
76. Domain for 4fjm:
  - Domain d4fjma2: 4fjm A:376-901 [252006]
    Other proteins in same PDB: d4fjma1
    automated match to d3qesa2
    protein/DNA complex; complexed with ca, dcp
77. Domain for 4fjn:
  - Domain d4fjna2: 4fjn A:376-900 [252008]
    Other proteins in same PDB: d4fjna1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, ttp
78. Domain for 4fjx:
  - Domain d4fjxa2: 4fjx A:376-901 [252010]
    Other proteins in same PDB: d4fjxa1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, dtp
79. Domain for 4fk0:
  - Domain d4fk0a2: 4fk0 A:376-900 [252020]
    Other proteins in same PDB: d4fk0a1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, dcp
80. Domain for 4fk2:
  - Domain d4fk2a2: 4fk2 A:376-901 [252022]
    Other proteins in same PDB: d4fk2a1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, ttp
81. Domain for 4fk4:
  - Domain d4fk4a2: 4fk4 A:376-901 [252026]
    Other proteins in same PDB: d4fk4a1
    automated match to d3spza2
    protein/DNA complex; complexed with ca, dgt
82. Domain for 4i9l:
  - Domain d4i9la2: 4i9l A:376-903 [229485]
    Other proteins in same PDB: d4i9la1
    automated match to d1ih7a2
    complexed with cl, gmp, so4; mutant
83. Domain for 4j2a:
  - Domain d4j2aa2: 4j2a A:376-901 [237017]
    Other proteins in same PDB: d4j2aa1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, ttp
84. Domain for 4j2b:
  - Domain d4j2ba2: 4j2b A:376-901 [237015]
    Other proteins in same PDB: d4j2ba1
    automated match to d1ih7a2
    protein/DNA complex; complexed with atp, ca
85. Domain for 4j2e:
  - Domain d4j2ea2: 4j2e A:376-901 [237019]
    Other proteins in same PDB: d4j2ea1
    automated match to d1ih7a2
    protein/DNA complex; complexed with atp, ca
86. Domains for 4khn:
  1. Domain d4khna2: 4khn A:376-901 [235166]
    Other proteins in same PDB: d4khna1, d4khnb1
    automated match to d4khnb2
    protein/DNA complex; complexed with ca, gol, na, so4, xg4; mutant
  2. Domain d4khnb2: 4khn B:376-901 [228219]
    Other proteins in same PDB: d4khna1, d4khnb1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, gol, na, so4, xg4; mutant
87. Domain for 4khq:
  - Domain d4khqa2: 4khq A:376-902 [228217]
    Other proteins in same PDB: d4khqa1
    automated match to d1ih7a2
    protein/DNA complex; complexed with ca, dup, na; mutant
88. Domain for 4khs:
  - Domain d4khsa2: 4khs A:376-902 [235170]
    Other proteins in same PDB: d4khsa1
    automated match to d4khqa2
    protein/DNA complex; complexed with ca, cl, na, ttp; mutant
89. Domain for 4khu:
  - Domain d4khua2: 4khu A:376-902 [235172]
    Other proteins in same PDB: d4khua1
    automated match to d4khqa2
    protein/DNA complex; complexed with ca, na, ttp; mutant
90. Domain for 4khw:
  - Domain d4khwa2: 4khw A:376-902 [235174]
    Other proteins in same PDB: d4khwa1
    automated match to d4khqa2
    protein/DNA complex; complexed with ca, na, ttp; mutant
91. Domain for 4khy:
  - Domain d4khya2: 4khy A:376-902 [235168]
    Other proteins in same PDB: d4khya1
    automated match to d4khqa2
    protein/DNA complex; complexed with ca, na, ttp; mutant
92. Domain for 4ki4:
  - Domain d4ki4a2: 4ki4 A:376-901 [235176]
    Other proteins in same PDB: d4ki4a1
    automated match to d4khqa2
    protein/DNA complex; complexed with ca, gol, na, ttp; mutant
93. Domain for 4ki6:
  - Domain d4ki6a2: 4ki6 A:376-902 [235178]
    Other proteins in same PDB: d4ki6a1
    automated match to d4khqa2
    protein/DNA complex; complexed with ca, na, po4, ttp; mutant
Desulfurococcus tok [TaxId:108142] [56684] (2 PDB entries)
1. Domain for 1d5a:
  - Domain d1d5aa2: 1d5a A:348-756 [43012]
    Other proteins in same PDB: d1d5aa1
    complexed with mg, so4
2. Domain for 1qqc:
  - Domain d1qqca2: 1qqc A:348-756 [43013]
    Other proteins in same PDB: d1qqca1
    complexed with mg, so4
Escherichia coli [TaxId:562] [103399] (1 PDB entry)
- Domain for 1q8i:
  - Domain d1q8ia2: 1q8i A:390-783 [96209]
    Other proteins in same PDB: d1q8ia1
Pyrococcus kodakaraensis [TaxId:311400] [56685] (2 PDB entries)
Uniprot P56689 1-758 # 93% sequence identity; Thermococcus kodakarensis KOD1 TaxID: 69014
1. Domain for 1wn7:
  - Domain d1wn7a2: 1wn7 A:348-756 [121089]
    Other proteins in same PDB: d1wn7a1
    complexed with gol, ni; mutant
2. Domain for 1wns:
  - Domain d1wnsa2: 1wns A:348-758 [109438]
    Other proteins in same PDB: d1wnsa1
Sulfolobus solfataricus [TaxId:2287] [118192] (1 PDB entry)
Uniprot P26811 40-864
- Domain for 1s5j:
  - Domain d1s5ja2: 1s5j A:450-864 [112041]
    Other proteins in same PDB: d1s5ja1
    complexed with mg, so4
Thermococcus gorgonarius [TaxId:71997] [56682] (1 PDB entry)
- Domain for 1tgo:
  - Domain d1tgoa2: 1tgo A:348-773 [43010]
    Other proteins in same PDB: d1tgoa1
Thermococcus sp., 9on-7 [TaxId:35749] [56683] (1 PDB entry)
- Domain for 1qht:
  - Domain d1qhta2: 1qht A:348-750 [43011]
    Other proteins in same PDB: d1qhta1

More info for Protein Family B DNA polymerase from e.8.1.1: DNA polymerase I

Timeline for Protein Family B DNA polymerase from e.8.1.1: DNA polymerase I:

Protein Family B DNA polymerase from e.8.1.1: DNA polymerase I first appeared (with stable ids) in SCOP 1.55, called Protein T4-like DNA polymerase from e.8.1.1: DNA polymerase I
Protein Family B DNA polymerase from e.8.1.1: DNA polymerase I appears in SCOPe 2.07