Lineage for Family e.8.1.1: DNA polymerase I

  1. Root: SCOPe 2.07
  2. 2568173Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
  3. 2571153Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 2571154Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 2571155Family e.8.1.1: DNA polymerase I [56673] (5 proteins)

Proteins:

  1. 2571156DNA polymerase I (Klenow fragment) [56674] (3 species)
    1. 2571157Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [56677] (44 PDB entries)
      Uniprot Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462
      Uniprot Q45458 298-876 # 88% sequence identity
    2. 2571207Species Escherichia coli [TaxId:562] [56675] (14 PDB entries)
    3. 2571222Species Thermus aquaticus [TaxId:271] [56676] (29 PDB entries)
  2. 2571252Family B DNA polymerase [56680] (7 species)
    1. 2571253Species Bacteriophage RB69 [TaxId:12353] [56681] (93 PDB entries)
    2. 2571386Species Desulfurococcus tok [TaxId:108142] [56684] (2 PDB entries)
    3. 2571389Species Escherichia coli [TaxId:562] [103399] (1 PDB entry)
    4. 2571391Species Pyrococcus kodakaraensis [TaxId:311400] [56685] (2 PDB entries)
      Uniprot P56689 1-758 # 93% sequence identity; Thermococcus kodakarensis KOD1 TaxID: 69014
    5. 2571394Species Sulfolobus solfataricus [TaxId:2287] [118192] (1 PDB entry)
      Uniprot P26811 40-864
    6. 2571396Species Thermococcus gorgonarius [TaxId:71997] [56682] (1 PDB entry)
    7. 2571398Species Thermococcus sp., 9on-7 [TaxId:35749] [56683] (1 PDB entry)
  3. 2571400phi29 DNA polymerase [118193] (1 species)
  4. 2571427T7 phage DNA polymerase [56678] (1 species)
  5. 2571448automated matches [226972] (9 species)
    not a true protein
    1. 2571449Species Escherichia coli K-12 [TaxId:83333] [225830] (1 PDB entry)
    2. 2571452Species Escherichia coli [TaxId:562] [225831] (3 PDB entries)
    3. 2571457Species Geobacillus kaustophilus [TaxId:1462] [233275] (8 PDB entries)
    4. 2571474Species Geobacillus kaustophilus [TaxId:235909] [226400] (6 PDB entries)
    5. 2571486Species Geobacillus sp. [TaxId:129337] [233671] (4 PDB entries)
    6. 2571491Species Geobacillus stearothermophilus [TaxId:1422] [261825] (1 PDB entry)
    7. 2571493Species Thermococcus gorgonarius [TaxId:71997] [225934] (3 PDB entries)
    8. 2571497Species Thermococcus kodakarensis [TaxId:69014] [226699] (1 PDB entry)
    9. 2571499Species Thermus aquaticus [TaxId:271] [267868] (4 PDB entries)

More info for Family e.8.1.1: DNA polymerase I

Timeline for Family e.8.1.1: DNA polymerase I: