PDB entry 1q9y

View 1q9y on RCSB PDB site
Description: crystal structure of enterobacteria phage rb69 gp43 DNA polymerase complexed with 8-oxoguanosine containing DNA
Class: transferase, replication/DNA
Keywords: protein_dna complex, transferase, replication/DNA complex
Deposited on 2003-08-26, released 2004-04-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.207
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase
    Species: Enterobacteria phage RB69 [TaxId:12353]
    Gene: 43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q38087 (3-End)
      • cloning artifact (0-2)
      • engineered (224)
      • engineered (329)
    Domains in SCOPe 2.08: d1q9ya1, d1q9ya2, d1q9ya3
  • Chain 'P':
    Compound: 5'-gcggactgcttac(dideoxycytidine)-3'
    Species: synthetic, synthetic
  • Chain 'T':
    Compound: 5'-ac(8-oxoguanosine)ggtaagcagtccgcg-3'
    Species: synthetic, synthetic
  • Heterogens: CA, DCP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1q9yA (A:)
hgsmkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpc
trklfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdiev
tspdgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggde
vpseiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifges
takrlsphrktrvkvienmygsreiitlfgisvldyidlykkfsftnqpsysldyisefe
lnvgklkydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqs
vfspiktwdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslyp
siirqvnispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitk
vfnqrkehkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsaks
lnemlfraqrtevagmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwi
erkvneylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfare
rmepaidrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmeg
tryaepklkimgletqksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyi
siasvssanniakydvggfpgpkcpfhirgiltynraikgnidapqvvegekvyvlplre
gnpfgdkciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkasl
fdmfdf

    Sequence, based on observed residues (ATOM records): (download) 
    >1q9yA (A:)
hgsmkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpc
trklfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdiev
tspdgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggde
vpseiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifges
takrlsphrktrvkvienmygsreiitlfgisvldyidlykkfsftnqpsysldyisefe
lnvgklkydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqs
vfspiktwdaiifnslkeqnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslyp
siirqvnispetiagtfkvaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitk
vfnqrkehkgymlaaqrngeiikealhnpnlsvdepldvdyrfdfsdeikekikklsaks
lnemlfraqrtevagmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwi
erkvneylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfare
rmepaidrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmeg
tryaepklkimgletqksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyi
siasvssanniakydvggfpgpkcpfhirgiltynraikgnidapqvvegekvyvlplre
gnpfgdkciawpsgteitdlikddvlhwmdytvllektfikplegftsaakldyekkasl
fd

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.