SCOP 1.73: Protein: Glutamate receptor ligand binding core

Lineage for Protein: Glutamate receptor ligand binding core

Root: SCOP 1.73
Class c: Alpha and beta proteins (a/b) [51349] (141 folds)

Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

Superfamily c.94.1: Periplasmic binding protein-like II [53850] (2 families)
Similar in architecture to the superfamily I but partly differs in topology
Family c.94.1.1: Phosphate binding protein-like [53851] (35 proteins)
Protein Glutamate receptor ligand binding core [53881] (4 species)

Species:

Rat (Rattus norvegicus), GluR2 [TaxId:10116] [53882] (53 PDB entries)
1. Domains for 1ftj:
  1. Domain d1ftja_: 1ftj A: [35826]
  2. Domain d1ftjb_: 1ftj B: [35827]
  3. Domain d1ftjc_: 1ftj C: [35828]
    complexed with glu, zn
2. Domain for 1ftk:
  - Domain d1ftka_: 1ftk A: [35819]
    complexed with kai
3. Domains for 1ftl:
  1. Domain d1ftla_: 1ftl A: [35823]
  2. Domain d1ftlb_: 1ftl B: [35824]
    complexed with dnq, so4
4. Domains for 1ftm:
  1. Domain d1ftma_: 1ftm A: [35820]
  2. Domain d1ftmb_: 1ftm B: [35821]
  3. Domain d1ftmc_: 1ftm C: [35822]
    complexed with amq, zn
5. Domains for 1fto:
  1. Domain d1ftoa_: 1fto A: [35829]
  2. Domain d1ftob_: 1fto B: [35830]
6. Domain for 1fw0:
  - Domain d1fw0a_: 1fw0 A: [35831]
    complexed with kai
7. Domain for 1gr2:
  - Domain d1gr2a_: 1gr2 A: [35825]
    complexed with kai
8. Domains for 1lb8:
  1. Domain d1lb8a_: 1lb8 A: [73800]
  2. Domain d1lb8b_: 1lb8 B: [73801]
    complexed with amq; mutant
9. Domains for 1lb9:
  1. Domain d1lb9a_: 1lb9 A: [73802]
  2. Domain d1lb9b_: 1lb9 B: [73803]
    complexed with dnq, so4; mutant
10. Domain for 1lbb:
  - Domain d1lbba_: 1lbb A: [73804]
    complexed with kai; mutant
11. Domains for 1lbc:
  1. Domain d1lbca_: 1lbc A: [73805]
  2. Domain d1lbcb_: 1lbc B: [73806]
  3. Domain d1lbcc_: 1lbc C: [73807]
    complexed with cyz, glu, zn; mutant
12. Domains for 1m5b:
  1. Domain d1m5ba_: 1m5b A: [78637]
  2. Domain d1m5bb_: 1m5b B: [78638]
  3. Domain d1m5bc_: 1m5b C: [78639]
    complexed with bn1, zn
13. Domain for 1m5c:
  - Domain d1m5ca_: 1m5c A: [78640]
    complexed with brh
14. Domain for 1m5d:
  - Domain d1m5da_: 1m5d A: [78641]
    complexed with brh, so4; mutant
15. Domains for 1m5e:
  1. Domain d1m5ea_: 1m5e A: [78642]
  2. Domain d1m5eb_: 1m5e B: [78643]
  3. Domain d1m5ec_: 1m5e C: [78644]
    complexed with act, am1, zn
16. Domains for 1m5f:
  1. Domain d1m5fa_: 1m5f A: [78645]
  2. Domain d1m5fb_: 1m5f B: [78646]
  3. Domain d1m5fc_: 1m5f C: [78647]
    complexed with act, am1, zn; mutant
17. Domains for 1mm6:
  1. Domain d1mm6a_: 1mm6 A: [79296]
  2. Domain d1mm6b_: 1mm6 B: [79297]
    complexed with gol, qus, so4
18. Domains for 1mm7:
  1. Domain d1mm7a_: 1mm7 A: [79298]
  2. Domain d1mm7b_: 1mm7 B: [79299]
  3. Domain d1mm7c_: 1mm7 C: [79300]
    complexed with qus, zn
19. Domains for 1mqd:
  1. Domain d1mqda_: 1mqd A: [85049]
  2. Domain d1mqdb_: 1mqd B: [85050]
  3. Domain d1mqdc_: 1mqd C: [85051]
  4. Domain d1mqdd_: 1mqd D: [85052]
    complexed with gol, shi, so4
20. Domains for 1mqg:
  1. Domain d1mqga_: 1mqg A: [91395]
  2. Domain d1mqgb_: 1mqg B: [91396]
    complexed with gol, iwd, so4
21. Domain for 1mqh:
  - Domain d1mqha_: 1mqh A: [91397]
    complexed with bwd
22. Domain for 1mqi:
  - Domain d1mqia_: 1mqi A: [91398]
    complexed with fwd
23. Domain for 1mqj:
  - Domain d1mqja_: 1mqj A: [91399]
    complexed with hwd, zn
24. Domains for 1ms7:
  1. Domain d1ms7a_: 1ms7 A: [85081]
  2. Domain d1ms7b_: 1ms7 B: [85082]
  3. Domain d1ms7c_: 1ms7 C: [85083]
    complexed with shi, zn
25. Domains for 1mxu:
  1. Domain d1mxua_: 1mxu A: [85199]
  2. Domain d1mxub_: 1mxu B: [85200]
  3. Domain d1mxuc_: 1mxu C: [85201]
    complexed with bwd, zn
26. Domains for 1mxv:
  1. Domain d1mxva_: 1mxv A: [85202]
  2. Domain d1mxvb_: 1mxv B: [85203]
  3. Domain d1mxvc_: 1mxv C: [85204]
    complexed with zn
27. Domains for 1mxw:
  1. Domain d1mxwa_: 1mxw A: [85205]
  2. Domain d1mxwb_: 1mxw B: [85206]
  3. Domain d1mxwc_: 1mxw C: [85207]
    complexed with zn
28. Domains for 1mxx:
  1. Domain d1mxxa_: 1mxx A: [85208]
  2. Domain d1mxxb_: 1mxx B: [85209]
  3. Domain d1mxxc_: 1mxx C: [85210]
    complexed with zn
29. Domains for 1mxy:
  1. Domain d1mxya_: 1mxy A: [85211]
  2. Domain d1mxyb_: 1mxy B: [85212]
  3. Domain d1mxyc_: 1mxy C: [85213]
    complexed with zn
30. Domains for 1mxz:
  1. Domain d1mxza_: 1mxz A: [85214]
  2. Domain d1mxzb_: 1mxz B: [85215]
  3. Domain d1mxzc_: 1mxz C: [85216]
    complexed with zn
31. Domains for 1my0:
  1. Domain d1my0a_: 1my0 A: [85217]
  2. Domain d1my0b_: 1my0 B: [85218]
  3. Domain d1my0c_: 1my0 C: [85219]
    complexed with zn
32. Domains for 1my1:
  1. Domain d1my1a_: 1my1 A: [85220]
  2. Domain d1my1b_: 1my1 B: [85221]
  3. Domain d1my1c_: 1my1 C: [85222]
    complexed with zn
33. Domains for 1my2:
  1. Domain d1my2a_: 1my2 A: [85223]
  2. Domain d1my2b_: 1my2 B: [85224]
  3. Domain d1my2c_: 1my2 C: [85225]
    complexed with amq, zn
34. Domains for 1my3:
  1. Domain d1my3a_: 1my3 A: [85226]
  2. Domain d1my3b_: 1my3 B: [85227]
  3. Domain d1my3c_: 1my3 C: [85228]
    complexed with bwd, zn
35. Domains for 1my4:
  1. Domain d1my4a_: 1my4 A: [85229]
  2. Domain d1my4b_: 1my4 B: [85230]
  3. Domain d1my4c_: 1my4 C: [85231]
    complexed with iwd, zn
36. Domains for 1n0t:
  1. Domain d1n0ta_: 1n0t A: [85243]
  2. Domain d1n0tb_: 1n0t B: [85244]
  3. Domain d1n0tc_: 1n0t C: [85245]
  4. Domain d1n0td_: 1n0t D: [85246]
    complexed with act, at1, so4
37. Domain for 1nnk:
  - Domain d1nnka_: 1nnk A: [85905]
    complexed with ce2, cl, zn
38. Domains for 1nnp:
  1. Domain d1nnpa_: 1nnp A: [85908]
  2. Domain d1nnpb_: 1nnp B: [85909]
    complexed with ce2, so4
39. Domain for 1p1n:
  - Domain d1p1na_: 1p1n A: [87698]
    complexed with kai; mutant
40. Domain for 1p1o:
  - Domain d1p1oa_: 1p1o A: [87699]
    complexed with qus, so4; mutant
41. Domains for 1p1q:
  1. Domain d1p1qa_: 1p1q A: [87700]
  2. Domain d1p1qb_: 1p1q B: [87701]
  3. Domain d1p1qc_: 1p1q C: [87702]
    complexed with amq, zn; mutant
42. Domains for 1p1u:
  1. Domain d1p1ua_: 1p1u A: [87711]
  2. Domain d1p1ub_: 1p1u B: [87712]
    complexed with amq, so4; mutant
43. Domains for 1p1w:
  1. Domain d1p1wa_: 1p1w A: [87713]
  2. Domain d1p1wb_: 1p1w B: [87714]
    complexed with amq, so4; mutant
44. Domain for 1syh:
  - Domain d1syha1: 1syh A:0-258 [119077]
    automatically matched to d1mm6a_
    complexed with cpw
45. Domains for 1syi:
  1. Domain d1syia1: 1syi A:1-258 [119078]
    automatically matched to d1m5da_
    complexed with cpw; mutant
  2. Domain d1syib1: 1syi B:1-258 [119079]
    automatically matched to d1m5da_
    complexed with cpw; mutant
46. Domain for 1wvj:
  - Domain d1wvja1: 1wvj A:3-261 [121342]
    automatically matched to d1mm6a_
    complexed with gol, ibc, so4
47. Domain for 1xhy:
  - Domain d1xhya1: 1xhy A:1-258 [122011]
    automatically matched to d1m5da_
    complexed with kai, so4; mutant
48. Domain for 2aix:
  - Domain d2aixa1: 2aix A:1-258 [126838]
    automatically matched to d1mm6a_
    complexed with u1k
49. Domains for 2al4:
  1. Domain d2al4a1: 2al4 A:4-261 [126958]
    automatically matched to d1mm6a_
    complexed with cx6, qus, zn; mutant
  2. Domain d2al4b1: 2al4 B:3-261 [126959]
    automatically matched to d1mm6a_
    complexed with cx6, qus, zn; mutant
  3. Domain d2al4c1: 2al4 C:4-261 [126960]
    automatically matched to d1mm6a_
    complexed with cx6, qus, zn; mutant
  4. Domain d2al4d1: 2al4 D:4-261 [126961]
    automatically matched to d1mm6a_
    complexed with cx6, qus, zn; mutant
  5. Domain d2al4e1: 2al4 E:3-261 [126962]
    automatically matched to d1mm6a_
    complexed with cx6, qus, zn; mutant
  6. Domain d2al4f1: 2al4 F:4-261 [126963]
    automatically matched to d1mm6a_
    complexed with cx6, qus, zn; mutant
50. Domains for 2al5:
  1. Domain d2al5a1: 2al5 A:3-261 [126964]
    automatically matched to d1mm6a_
    complexed with 4mp, fwd; mutant
  2. Domain d2al5b1: 2al5 B:3-261 [126965]
    automatically matched to d1mm6a_
    complexed with 4mp, fwd; mutant
51. Domain for 2anj:
  - Domain d2anja1: 2anj A:3-117,A:120-262 [127054]
    complexed with kai; mutant
52. Domains for 2cmo:
  1. Domain d2cmoa1: 2cmo A:5-261 [130630]
    automatically matched to d1mm6a_
    complexed with glu, m1l, so4
  2. Domain d2cmob1: 2cmo B:5-261 [130631]
    automatically matched to d1mm6a_
    complexed with glu, m1l, so4
53. Domains for 2p2a:
  1. Domain d2p2aa1: 2p2a A:0-258 [139461]
    automatically matched to d1mm6a_
    complexed with glu, mp9, so4
  2. Domain d2p2ab1: 2p2a B:1-258 [139462]
    automatically matched to d1mm6a_
    complexed with glu, mp9, so4
Rat (Rattus norvegicus), GluR5 [TaxId:10116] [142802] (6 PDB entries)
1. Domain for 1txf:
  - Domain d1txfa1: 1txf A:5-116,A:119-252 [119386]
    complexed with glu
2. Domains for 1ycj:
  1. Domain d1ycja1: 1ycj A:429-546,A:667-799 [122966]
    complexed with glu, so4
  2. Domain d1ycjb1: 1ycj B:430-546,B:667-799 [122967]
    automatically matched to 1YCJ A:429-546,A:667-799
    complexed with glu, so4
3. Domains for 2f34:
  1. Domain d2f34a1: 2f34 A:5-116,A:119-252 [132852]
    automatically matched to 1TXF A:5-116,A:119-252
    complexed with 1pe, cl, uba; mutant
  2. Domain d2f34b1: 2f34 B:5-116,B:119-252 [132853]
    automatically matched to 1TXF A:5-116,A:119-252
    complexed with 1pe, cl, uba; mutant
4. Domains for 2f35:
  1. Domain d2f35a1: 2f35 A:5-116,A:119-252 [132854]
    automatically matched to 1TXF A:5-116,A:119-252
    complexed with 1pe, cl, ubc; mutant
  2. Domain d2f35b1: 2f35 B:5-116,B:119-252 [132855]
    automatically matched to 1TXF A:5-116,A:119-252
    complexed with 1pe, cl, ubc; mutant
5. Domains for 2f36:
  1. Domain d2f36a1: 2f36 A:5-116,A:119-252 [132856]
    automatically matched to 1TXF A:5-116,A:119-252
    complexed with glu, so4; mutant
  2. Domain d2f36b1: 2f36 B:5-116,B:119-252 [132857]
    automatically matched to 1TXF A:5-116,A:119-252
    complexed with glu, so4; mutant
  3. Domain d2f36c1: 2f36 C:5-116,C:119-252 [132858]
    automatically matched to 1TXF A:5-116,A:119-252
    complexed with glu, so4; mutant
  4. Domain d2f36d1: 2f36 D:5-116,D:119-252 [132859]
    automatically matched to 1TXF A:5-116,A:119-252
    complexed with glu, so4; mutant
6. Domains for 2ojt:
  1. Domain d2ojta1: 2ojt A:5-116,A:119-252 [139116]
    automatically matched to 1TXF A:5-116,A:119-252
    complexed with 1pe, br, uba; mutant
  2. Domain d2ojtb1: 2ojt B:5-116,B:119-252 [139117]
    automatically matched to 1TXF A:5-116,A:119-252
    complexed with 1pe, br, uba; mutant
Rat (Rattus norvegicus), GluR6 [TaxId:10116] [142801] (6 PDB entries)
1. Domain for 1s50:
  - Domain d1s50a1: 1s50 A:2-117,A:120-259 [118864]
    complexed with glu
2. Domains for 1s7y:
  1. Domain d1s7ya1: 1s7y A:3-117,A:120-253 [118884]
    automatically matched to 1S50 A:2-117,A:120-259
    complexed with glu; mutant
  2. Domain d1s7yb1: 1s7y B:3-117,B:120-253 [118885]
    automatically matched to 1S50 A:2-117,A:120-259
    complexed with glu; mutant
3. Domains for 1s9t:
  1. Domain d1s9ta1: 1s9t A:3-117,A:120-253 [118923]
    automatically matched to 1S50 A:2-117,A:120-259
    complexed with cl, qus
  2. Domain d1s9tb1: 1s9t B:3-117,B:120-253 [118924]
    automatically matched to 1S50 A:2-117,A:120-259
    complexed with cl, qus
4. Domains for 1sd3:
  1. Domain d1sd3a1: 1sd3 A:3-117,A:120-253 [118947]
    automatically matched to 1S50 A:2-117,A:120-259
    complexed with sym
  2. Domain d1sd3b1: 1sd3 B:3-117,B:120-253 [118948]
    automatically matched to 1S50 A:2-117,A:120-259
    complexed with sym
5. Domains for 1tt1:
  1. Domain d1tt1a1: 1tt1 A:3-117,A:120-253 [119338]
    automatically matched to 1S50 A:2-117,A:120-259
    complexed with kai
  2. Domain d1tt1b1: 1tt1 B:3-117,B:120-253 [119339]
    automatically matched to 1S50 A:2-117,A:120-259
    complexed with kai
6. Domains for 1yae:
  1. Domain d1yaea1: 1yae A:421-544,A:668-804 [122809]
    complexed with doq, fuc, nag
  2. Domain d1yaeb1: 1yae B:423-544,B:668-804 [122810]
    automatically matched to 1YAE A:421-544,A:668-804
    complexed with doq, fuc, nag
  3. Domain d1yaec1: 1yae C:423-544,C:669-802 [122811]
    automatically matched to 1YAE A:421-544,A:668-804
    complexed with doq, fuc, nag
  4. Domain d1yaed1: 1yae D:423-544,D:668-804 [122812]
    automatically matched to 1YAE A:421-544,A:668-804
    complexed with doq, fuc, nag
  5. Domain d1yaee1: 1yae E:423-544,E:668-801 [122813]
    automatically matched to 1YAE A:421-544,A:668-804
    complexed with doq, fuc, nag
Synechocystis sp., GluR0 [TaxId:1143] [64192] (3 PDB entries)
1. Domain for 1ii5:
  - Domain d1ii5a_: 1ii5 A: [62412]
    complexed with glu
2. Domain for 1iit:
  - Domain d1iita_: 1iit A: [62460]
    complexed with ser
3. Domain for 1iiw:
  - Domain d1iiwa_: 1iiw A: [62461]

More info for Protein Glutamate receptor ligand binding core from c.94.1.1: Phosphate binding protein-like

Timeline for Protein Glutamate receptor ligand binding core from c.94.1.1: Phosphate binding protein-like:

Protein Glutamate receptor ligand binding core from c.94.1.1: Phosphate binding protein-like first appeared (with stable ids) in SCOP 1.55, called Protein Glutamate receptor ligand binding core (GluR2) from c.94.1.1: Phosphate binding protein-like
Protein Glutamate receptor ligand binding core from c.94.1.1: Phosphate binding protein-like appears in SCOP 1.71
Protein Glutamate receptor ligand binding core from c.94.1.1: Phosphate binding protein-like appears in SCOP 1.75
Protein Glutamate receptor ligand binding core from c.94.1.1: Phosphate binding protein-like appears in the current release, SCOPe 2.08