SCOPe 2.07: Species: Escherichia coli [TaxId: 562]

Lineage for Species: Escherichia coli [TaxId: 562]

Root: SCOPe 2.07
Class a: All alpha proteins [46456] (289 folds)
Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
Superfamily a.4.5: "Winged helix" DNA-binding domain [46785] (86 families)
contains a small beta-sheet (wing)
Family a.4.5.4: CAP C-terminal domain-like [46796] (9 proteins)
Protein Catabolite gene activator protein (CAP), C-terminal domain [46797] (1 species)
N-terminal domain has double beta-helix fold
Species Escherichia coli [TaxId:562] [46798] (27 PDB entries)

PDB entries in Species: Escherichia coli [TaxId: 562]:

Domain(s) for 1cgp:
1. Domain d1cgpa1: 1cgp A:138-205 [16096]
  Other proteins in same PDB: d1cgpa2, d1cgpb2
  protein/DNA complex; complexed with cmp
2. Domain d1cgpb1: 1cgp B:138-205 [16097]
  Other proteins in same PDB: d1cgpa2, d1cgpb2
  protein/DNA complex; complexed with cmp
Domain(s) for 1dbc:
1. Domain d1dbca4: 1dbc A:138-207 [302319]
  Other proteins in same PDB: d1dbca3, d1dbcb3
  automated match to d1o3ra1
  protein/DNA complex; complexed with cmp
2. Domain d1dbcb4: 1dbc B:138-205 [302321]
  Other proteins in same PDB: d1dbca3, d1dbcb3
  automated match to d1o3ra1
  protein/DNA complex; complexed with cmp
Domain(s) for 1g6n:
1. Domain d1g6na1: 1g6n A:138-206 [16100]
  Other proteins in same PDB: d1g6na2, d1g6nb2
  complexed with cmp
2. Domain d1g6nb1: 1g6n B:438-507 [16101]
  Other proteins in same PDB: d1g6na2, d1g6nb2
  complexed with cmp
Domain(s) for 1hw5:
1. Domain d1hw5a1: 1hw5 A:138-208 [16098]
  Other proteins in same PDB: d1hw5a2, d1hw5b2
  complexed with cmp
2. Domain d1hw5b1: 1hw5 B:138-205 [16099]
  Other proteins in same PDB: d1hw5a2, d1hw5b2
  complexed with cmp
Domain(s) for 1i5z:
1. Domain d1i5za1: 1i5z A:138-206 [83669]
  Other proteins in same PDB: d1i5za2, d1i5zb2
  complexed with cmp, trs
2. Domain d1i5zb1: 1i5z B:138-207 [83671]
  Other proteins in same PDB: d1i5za2, d1i5zb2
  complexed with cmp, trs
Domain(s) for 1i6x:
1. Domain d1i6xa1: 1i6x A:138-206 [83673]
  Other proteins in same PDB: d1i6xa2, d1i6xb2
  complexed with cmp, trs; mutant
2. Domain d1i6xb1: 1i6x B:138-207 [83675]
  Other proteins in same PDB: d1i6xa2, d1i6xb2
  complexed with cmp, trs; mutant
Domain(s) for 1j59:
1. Domain d1j59a1: 1j59 A:138-207 [71532]
  Other proteins in same PDB: d1j59a2, d1j59b2
  protein/DNA complex; complexed with cmp
2. Domain d1j59b1: 1j59 B:138-205 [71534]
  Other proteins in same PDB: d1j59a2, d1j59b2
  protein/DNA complex; complexed with cmp
Domain(s) for 1lb2:
- Domain d1lb2a1: 1lb2 A:138-209 [77869]
  Other proteins in same PDB: d1lb2a2, d1lb2b_, d1lb2e_
  protein/DNA complex; protein/RNA complex; complexed with cmp
Domain(s) for 1o3q:
- Domain d1o3qa1: 1o3q A:138-207 [86605]
  Other proteins in same PDB: d1o3qa2
  protein/DNA complex; complexed with cmp
Domain(s) for 1o3r:
- Domain d1o3ra1: 1o3r A:138-207 [86607]
  Other proteins in same PDB: d1o3ra2
  protein/DNA complex; complexed with cmp
Domain(s) for 1o3s:
- Domain d1o3sa1: 1o3s A:138-207 [86609]
  Other proteins in same PDB: d1o3sa2
  protein/DNA complex; complexed with cmp
Domain(s) for 1o3t:
1. Domain d1o3ta1: 1o3t A:138-207 [86611]
  Other proteins in same PDB: d1o3ta2, d1o3tb2
  protein/DNA complex; complexed with cmp
2. Domain d1o3tb1: 1o3t B:138-205 [86613]
  Other proteins in same PDB: d1o3ta2, d1o3tb2
  protein/DNA complex; complexed with cmp
Domain(s) for 1run:
1. Domain d1runa1: 1run A:138-209 [16103]
  Other proteins in same PDB: d1runa2, d1runb2
  protein/DNA complex; complexed with cmp
2. Domain d1runb1: 1run B:138-205 [16104]
  Other proteins in same PDB: d1runa2, d1runb2
  protein/DNA complex; complexed with cmp
Domain(s) for 1ruo:
1. Domain d1ruoa1: 1ruo A:138-206 [16105]
  Other proteins in same PDB: d1ruoa2, d1ruob2
  protein/DNA complex; complexed with cmp; mutant
2. Domain d1ruob1: 1ruo B:138-209 [16106]
  Other proteins in same PDB: d1ruoa2, d1ruob2
  protein/DNA complex; complexed with cmp; mutant
Domain(s) for 1zrc:
1. Domain d1zrca1: 1zrc A:138-207 [125531]
  Other proteins in same PDB: d1zrca2, d1zrcb2
  automated match to d1i5zb1
  protein/DNA complex; complexed with cmp
2. Domain d1zrcb1: 1zrc B:138-207 [125533]
  Other proteins in same PDB: d1zrca2, d1zrcb2
  automated match to d1i5zb1
  protein/DNA complex; complexed with cmp
Domain(s) for 1zrd:
1. Domain d1zrda1: 1zrd A:138-207 [125535]
  Other proteins in same PDB: d1zrda2, d1zrdb2
  automated match to d1i5zb1
  protein/DNA complex; complexed with cmp
2. Domain d1zrdb1: 1zrd B:138-207 [125537]
  Other proteins in same PDB: d1zrda2, d1zrdb2
  automated match to d1i5zb1
  protein/DNA complex; complexed with cmp
Domain(s) for 1zre:
1. Domain d1zrea1: 1zre A:138-207 [125539]
  Other proteins in same PDB: d1zrea2, d1zreb2
  automated match to d1i5zb1
  protein/DNA complex; complexed with cmp
2. Domain d1zreb1: 1zre B:138-207 [125541]
  Other proteins in same PDB: d1zrea2, d1zreb2
  automated match to d1i5zb1
  protein/DNA complex; complexed with cmp
Domain(s) for 1zrf:
1. Domain d1zrfa1: 1zrf A:138-209 [125543]
  Other proteins in same PDB: d1zrfa2, d1zrfb2
  automated match to d1i5zb1
  protein/DNA complex; complexed with cmp, dio
2. Domain d1zrfb1: 1zrf B:138-207 [125545]
  Other proteins in same PDB: d1zrfa2, d1zrfb2
  automated match to d1i5zb1
  protein/DNA complex; complexed with cmp, dio
Domain(s) for 2cgp:
- Domain d2cgpa1: 2cgp A:138-207 [16102]
  Other proteins in same PDB: d2cgpa2
  protein/DNA complex; complexed with cmp
Domain(s) for 2gzw:
1. Domain d2gzwa1: 2gzw A:138-206 [135917]
  Other proteins in same PDB: d2gzwa2, d2gzwb2, d2gzwc2, d2gzwd2
  automated match to d1i5za1
  complexed with cmp
2. Domain d2gzwb1: 2gzw B:138-203 [135919]
  Other proteins in same PDB: d2gzwa2, d2gzwb2, d2gzwc2, d2gzwd2
  automated match to d1i5za1
  complexed with cmp
3. Domain d2gzwc1: 2gzw C:138-206 [135921]
  Other proteins in same PDB: d2gzwa2, d2gzwb2, d2gzwc2, d2gzwd2
  automated match to d1i5za1
  complexed with cmp
4. Domain d2gzwd1: 2gzw D:138-208 [135923]
  Other proteins in same PDB: d2gzwa2, d2gzwb2, d2gzwc2, d2gzwd2
  automated match to d1i5zb1
  complexed with cmp
Domain(s) for 3n4m:
- Domain d3n4ma2: 3n4m A:138-209 [199932]
  Other proteins in same PDB: d3n4ma1, d3n4mb_, d3n4mc_
  automated match to d1i5zb1
  protein/DNA complex; protein/RNA complex; complexed with cmp, peg
Domain(s) for 3qop:
1. Domain d3qopa2: 3qop A:138-207 [215333]
  Other proteins in same PDB: d3qopa1, d3qopb1
  automated match to d1i5za1
  complexed with cmp, gol
2. Domain d3qopb2: 3qop B:138-207 [215335]
  Other proteins in same PDB: d3qopa1, d3qopb1
  automated match to d1i5za1
  complexed with cmp, gol
Domain(s) for 3ryp:
1. Domain d3rypa2: 3ryp A:138-207 [216120]
  Other proteins in same PDB: d3rypa1, d3rypb1
  automated match to d1g6nb1
  complexed with cmp, gol
2. Domain d3rypb2: 3ryp B:138-208 [216122]
  Other proteins in same PDB: d3rypa1, d3rypb1
  automated match to d1g6nb1
  complexed with cmp, gol
Domain(s) for 3ryr:
1. Domain d3ryra2: 3ryr A:138-207 [216124]
  Other proteins in same PDB: d3ryra1, d3ryrb1
  automated match to d1g6nb1
  complexed with cmp
2. Domain d3ryrb2: 3ryr B:138-208 [216126]
  Other proteins in same PDB: d3ryra1, d3ryrb1
  automated match to d1g6nb1
  complexed with cmp
Domain(s) for 4ft8:
1. Domain d4ft8a2: 4ft8 A:138-207 [229819]
  Other proteins in same PDB: d4ft8a1, d4ft8b1
  automated match to d1i5zb1
  complexed with cmp, co, so4
2. Domain d4ft8b2: 4ft8 B:138-206 [229818]
  Other proteins in same PDB: d4ft8a1, d4ft8b1
  automated match to d1i5za1
  complexed with cmp, co, so4
Domain(s) for 4n9h:
1. Domain d4n9ha2: 4n9h A:138-209 [257975]
  Other proteins in same PDB: d4n9ha1, d4n9hb1
  automated match to d1g6nb1
2. Domain d4n9hb2: 4n9h B:138-209 [257973]
  Other proteins in same PDB: d4n9ha1, d4n9hb1
  automated match to d1g6nb1
Domain(s) for 4n9i:
1. Domain d4n9ia2: 4n9i A:138-209 [257979]
  Other proteins in same PDB: d4n9ia1, d4n9ib1, d4n9ic1, d4n9id1
  automated match to d1g6nb1
  protein/DNA complex; complexed with pcg
2. Domain d4n9ib2: 4n9i B:138-209 [257977]
  Other proteins in same PDB: d4n9ia1, d4n9ib1, d4n9ic1, d4n9id1
  automated match to d1g6nb1
  protein/DNA complex; complexed with pcg
3. Domain d4n9ic2: 4n9i C:138-209 [257981]
  Other proteins in same PDB: d4n9ia1, d4n9ib1, d4n9ic1, d4n9id1
  automated match to d1g6nb1
  protein/DNA complex; complexed with pcg
4. Domain d4n9id2: 4n9i D:138-209 [257983]
  Other proteins in same PDB: d4n9ia1, d4n9ib1, d4n9ic1, d4n9id1
  automated match to d1g6nb1
  protein/DNA complex; complexed with pcg

More info for Species Escherichia coli [TaxId:562] from a.4.5.4 Catabolite gene activator protein (CAP), C-terminal domain

Timeline for Species Escherichia coli [TaxId:562] from a.4.5.4 Catabolite gene activator protein (CAP), C-terminal domain:

Species Escherichia coli [TaxId:562] from a.4.5.4 Catabolite gene activator protein (CAP), C-terminal domain first appeared (with stable ids) in SCOP 1.55
Species Escherichia coli [TaxId:562] from a.4.5.4 Catabolite gene activator protein (CAP), C-terminal domain appears in SCOPe 2.06
Species Escherichia coli [TaxId:562] from a.4.5.4 Catabolite gene activator protein (CAP), C-terminal domain appears in the current release, SCOPe 2.08