SCOPe 2.08: Domain d6ymea1: 6yme A:3-426

Lineage for d6ymea1 (6yme A:3-426)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
   main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

4. Superfamily c.67.1: PLP-dependent transferases [53383] (10 families)

5. Family c.67.1.4: GABA-aminotransferase-like [53417] (17 proteins)
   formerly omega-Aminoacid:pyruvate aminotransferase-like

6. Protein automated matches [190152] (25 species)
   not a true protein

7. Species Aphanothece halophytica [TaxId:72020] [387036] (3 PDB entries)

8. Domain d6ymea1: 6yme A:3-426 [387096]
   Other proteins in same PDB: d6ymea2
   automated match to d3pgya_
   complexed with gol, llp, peg

Details for d6ymea1

PDB Entry: 6yme, 1.77 Å

PDB Description: crystal structure of serine hydroxymethyltransferase from aphanothece halophytica in the plp-internal aldimine state

PDB Compounds: (A:) serine hydroxymethyltransferase

SCOPe Domain Sequences for d6ymea1:

Sequence; same for both SEQRES and ATOM records:

>d6ymea1 c.67.1.4 (A:3-426) automated matches {Aphanothece halophytica [TaxId: 72020]}
qtnldfllqtdptisgmmqkelqrqrehleliasenftspavmatqgsvltnkyaeglpk
kryyggcefideieqvaidrakelfgaasanvqphsgaqanfavfltllkpgdkimgmdl
shgghlthgspanvsgkwfeavhygvsqeteqldydhilevarqerpkliicgysaypri
infekfraiadevgaylladiahiaglvasghhpnpvphcdvvtttthktlrgprgglil
trdpelgkkfnksvfpgtqggplehviagkavafgealkpefkaysgqvianaqamaqql
qnrgfkivsggtdnhlmlvdlrsvnltgkqadqlvsdvnitankntvpfdpespfvtsgl
rlgspamttrglgtedfaeianiiadrlqnpedeqvkqacvqrvaalcerfplyphlnap
vpam

Timeline for d6ymea1:

• d6ymea1 first appeared in SCOPe 2.07