SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2130990Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2130991Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2131690Family c.67.1.4: GABA-aminotransferase-like [53417] (17 protein domains)
    formerly omega-Aminoacid:pyruvate aminotransferase-like
  6. 2131998Protein automated matches [190152] (22 species)
    not a true protein

Species:

  1. 2131999Bacillus anthracis [TaxId:261594] [189189] (1 PDB entry)
  2. 2132004Bacillus subtilis [TaxId:1423] [188688] (1 PDB entry)
  3. 2132006Burkholderia cenocepacia [TaxId:216591] [229698] (4 PDB entries)
    1. Domains for 4mso:
      1. 2132007Domain d4msoa_: 4mso A: [229699]
        automated match to d3gbxa_
        complexed with edo, po4
      2. 2132008Domain d4msob_: 4mso B: [229700]
        automated match to d3gbxa_
        complexed with edo, po4
    2. Domains for 4n0w:
      1. 2132009Domain d4n0wa1: 4n0w A:1-415 [235713]
        Other proteins in same PDB: d4n0wa2
        automated match to d4n0wc_
        complexed with plp, so4
      2. 2132010Domain d4n0wb_: 4n0w B: [235714]
        Other proteins in same PDB: d4n0wa2
        automated match to d4n0wc_
        complexed with plp, so4
      3. 2132011Domain d4n0wc_: 4n0w C: [229707]
        Other proteins in same PDB: d4n0wa2
        automated match to d3gbxa_
        complexed with plp, so4
      4. 2132012Domain d4n0wd_: 4n0w D: [235715]
        Other proteins in same PDB: d4n0wa2
        automated match to d4n0wc_
        complexed with plp, so4
    3. Domains for 4ot8:
      1. 2132013Domain d4ot8a_: 4ot8 A: [257323]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
      2. 2132014Domain d4ot8b_: 4ot8 B: [263342]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
      3. 2132015Domain d4ot8c1: 4ot8 C:1-414 [263343]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
      4. 2132016Domain d4ot8d_: 4ot8 D: [263344]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
    4. Domains for 4otl:
      1. 2132017Domain d4otla_: 4otl A: [267133]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
      2. 2132018Domain d4otlb_: 4otl B: [267134]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
      3. 2132019Domain d4otlc_: 4otl C: [267135]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
      4. 2132020Domain d4otld1: 4otl D:1-415 [267136]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
  4. 2132021Burkholderia cepacia [TaxId:292] [186906] (3 PDB entries)
    1. Domain for 1zc9:
    2. Domain for 1zob:
    3. Domain for 1zod:
  5. 2132025Campylobacter jejuni [TaxId:197] [275525] (1 PDB entry)
  6. 2132027Coxiella burnetii [TaxId:227377] [193632] (1 PDB entry)
  7. 2132030Escherichia coli [TaxId:562] [187107] (1 PDB entry)
  8. 2132032Human (Homo sapiens) [TaxId:9606] [255069] (1 PDB entry)
  9. 2132035Plasmodium falciparum [TaxId:36329] [255985] (1 PDB entry)
  10. 2132040Rhodobacter capsulatus [TaxId:1061] [187497] (3 PDB entries)
    1. Domains for 2bwn:
      1. 2132045Domain d2bwnb_: 2bwn B: [129369]
        Other proteins in same PDB: d2bwna1
        automated match to d2bwna1
        complexed with acy, cl, fmt, plp, sin, so4
      2. 2132046Domain d2bwnd_: 2bwn D: [129370]
        Other proteins in same PDB: d2bwna1
        automated match to d2bwna1
        complexed with acy, cl, fmt, plp, sin, so4
      3. 2132047Domain d2bwne_: 2bwn E: [129371]
        Other proteins in same PDB: d2bwna1
        automated match to d2bwna1
        complexed with acy, cl, fmt, plp, sin, so4
    2. Domains for 2bwo:
      1. 2132048Domain d2bwoa_: 2bwo A: [129372]
        automated match to d2bwna1
        complexed with plp, sca
      2. 2132049Domain d2bwob_: 2bwo B: [129373]
        automated match to d2bwna1
        complexed with plp, sca
      3. 2132050Domain d2bwod_: 2bwo D: [129374]
        automated match to d2bwna1
        complexed with plp, sca
      4. 2132051Domain d2bwoe_: 2bwo E: [129375]
        automated match to d2bwna1
        complexed with plp, sca
    3. Domains for 2bwp:
      1. 2132041Domain d2bwpa_: 2bwp A: [129376]
        automated match to d2bwna1
        complexed with acy, plg
      2. 2132042Domain d2bwpb_: 2bwp B: [129377]
        automated match to d2bwna1
        complexed with acy, plg
      3. 2132043Domain d2bwpd_: 2bwp D: [129378]
        automated match to d2bwna1
        complexed with acy, plg
      4. 2132044Domain d2bwpe_: 2bwp E: [129379]
        automated match to d2bwna1
        complexed with acy, plg
  11. 2132052Salmonella enterica [TaxId:90371] [237706] (1 PDB entry)
  12. 2132054Salmonella typhimurium [TaxId:90371] [188804] (1 PDB entry)
  13. 2132057Staphylococcus aureus [TaxId:93062] [189536] (1 PDB entry)
  14. 2132062Streptococcus thermophilus [TaxId:299768] [270038] (3 PDB entries)
    1. Domains for 4wxb:
      1. 2132065Domain d4wxba_: 4wxb A: [270046]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
      2. 2132066Domain d4wxbb_: 4wxb B: [270042]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
      3. 2132067Domain d4wxbc_: 4wxb C: [270043]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
      4. 2132068Domain d4wxbd_: 4wxb D: [270045]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
    2. Domains for 4wxf:
      1. 2132069Domain d4wxfa_: 4wxf A: [270041]
        automated match to d1dfoa_
        complexed with gol, plg
      2. 2132070Domain d4wxfc_: 4wxf C: [270044]
        automated match to d1dfoa_
        complexed with gol, plg
    3. Domains for 4wxg:
      1. 2132063Domain d4wxga_: 4wxg A: [270039]
        automated match to d1dfoa_
        complexed with 2bo, gol, na
      2. 2132064Domain d4wxgc_: 4wxg C: [270040]
        automated match to d1dfoa_
        complexed with 2bo, gol, na
  15. 2132071Synechococcus elongatus [TaxId:1140] [193337] (1 PDB entry)
  16. 2132073Synechococcus elongatus [TaxId:269084] [187818] (8 PDB entries)
    1. Domains for 2hoy:
      1. 2132082Domain d2hoya_: 2hoy A: [165183]
        automated match to d2gsaa_
        complexed with po4
      2. 2132083Domain d2hoyb_: 2hoy B: [165184]
        automated match to d2gsaa_
        complexed with po4
    2. Domains for 2hoz:
      1. 2132078Domain d2hoza_: 2hoz A: [165185]
        automated match to d2gsaa_
        complexed with hoz, pmp
      2. 2132079Domain d2hozb_: 2hoz B: [165186]
        automated match to d2gsaa_
        complexed with hoz, pmp
    3. Domains for 2hp1:
      1. 2132074Domain d2hp1a_: 2hp1 A: [165187]
        automated match to d2gsaa_
        complexed with ea5, hoz, plp
      2. 2132075Domain d2hp1b_: 2hp1 B: [165188]
        automated match to d2gsaa_
        complexed with ea5, hoz, plp
    4. Domains for 2hp2:
      1. 2132087Domain d2hp2a_: 2hp2 A: [165189]
        automated match to d2gsaa_
        complexed with hoz, ke4, plp
      2. 2132088Domain d2hp2b_: 2hp2 B: [165190]
        automated match to d2gsaa_
        complexed with hoz, ke4, plp
    5. Domains for 3fq7:
      1. 2132080Domain d3fq7a_: 3fq7 A: [175967]
        automated match to d2gsaa_
        complexed with pxg
      2. 2132081Domain d3fq7b_: 3fq7 B: [175968]
        automated match to d2gsaa_
        complexed with pxg
    6. Domains for 3fq8:
      1. 2132076Domain d3fq8a_: 3fq8 A: [175969]
        automated match to d2gsaa_
        complexed with pmp; mutant
      2. 2132077Domain d3fq8b_: 3fq8 B: [175970]
        automated match to d2gsaa_
        complexed with pmp; mutant
    7. Domains for 3fqa:
      1. 2132085Domain d3fqaa_: 3fqa A: [175971]
        automated match to d2gsaa_
        complexed with gab, pmp
      2. 2132086Domain d3fqab_: 3fqa B: [175972]
        automated match to d2gsaa_
        complexed with gab, pmp
    8. Domain for 3usf:
  17. 2132089Thermus thermophilus HB8 [TaxId:300852] [187623] (1 PDB entry)
  18. 2132092Wild boar (Sus scrofa) [311140] (1 PDB entry)
  19. 2132097Yersinia pestis [TaxId:214092] [189635] (1 PDB entry)
  20. 2275153Arabidopsis thaliana [TaxId:3702] [318454] (1 PDB entry)
  21. 2285741Citrobacter rodentium [TaxId:97825] [329042] (1 PDB entry)
  22. 2291057Acinetobacter baumannii [TaxId:470] [334358] (1 PDB entry)

More info for Protein automated matches from c.67.1.4: GABA-aminotransferase-like

Timeline for Protein automated matches from c.67.1.4: GABA-aminotransferase-like: