Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2130990Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2130991Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2131690Family c.67.1.4: GABA-aminotransferase-like [53417] (17 protein domains)
    formerly omega-Aminoacid:pyruvate aminotransferase-like
  6. 2131998Protein automated matches [190152] (22 species)
    not a true protein

Species:

  1. 2131999Bacillus anthracis [TaxId:261594] [189189] (1 PDB entry)
  2. 2132004Bacillus subtilis [TaxId:1423] [188688] (1 PDB entry)
  3. 2132006Burkholderia cenocepacia [TaxId:216591] [229698] (4 PDB entries)
    1. Domains for 4mso:
      1. 2132007Domain d4msoa_: 4mso A: [229699]
        automated match to d3gbxa_
        complexed with edo, po4
      2. 2132008Domain d4msob_: 4mso B: [229700]
        automated match to d3gbxa_
        complexed with edo, po4
    2. Domains for 4n0w:
      1. 2132009Domain d4n0wa1: 4n0w A:1-415 [235713]
        Other proteins in same PDB: d4n0wa2
        automated match to d4n0wc_
        complexed with plp, so4
      2. 2132010Domain d4n0wb_: 4n0w B: [235714]
        Other proteins in same PDB: d4n0wa2
        automated match to d4n0wc_
        complexed with plp, so4
      3. 2132011Domain d4n0wc_: 4n0w C: [229707]
        Other proteins in same PDB: d4n0wa2
        automated match to d3gbxa_
        complexed with plp, so4
      4. 2132012Domain d4n0wd_: 4n0w D: [235715]
        Other proteins in same PDB: d4n0wa2
        automated match to d4n0wc_
        complexed with plp, so4
    3. Domains for 4ot8:
      1. 2132013Domain d4ot8a_: 4ot8 A: [257323]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
      2. 2132014Domain d4ot8b_: 4ot8 B: [263342]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
      3. 2132015Domain d4ot8c1: 4ot8 C:1-414 [263343]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
      4. 2132016Domain d4ot8d_: 4ot8 D: [263344]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
    4. Domains for 4otl:
      1. 2132017Domain d4otla_: 4otl A: [267133]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
      2. 2132018Domain d4otlb_: 4otl B: [267134]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
      3. 2132019Domain d4otlc_: 4otl C: [267135]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
      4. 2132020Domain d4otld1: 4otl D:1-415 [267136]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
  4. 2132021Burkholderia cepacia [TaxId:292] [186906] (3 PDB entries)
    1. Domain for 1zc9:
    2. Domain for 1zob:
    3. Domain for 1zod:
  5. 2132025Campylobacter jejuni [TaxId:197] [275525] (1 PDB entry)
  6. 2132027Coxiella burnetii [TaxId:227377] [193632] (1 PDB entry)
  7. 2132030Escherichia coli [TaxId:562] [187107] (1 PDB entry)
  8. 2132032Human (Homo sapiens) [TaxId:9606] [255069] (1 PDB entry)
  9. 2132035Plasmodium falciparum [TaxId:36329] [255985] (1 PDB entry)
  10. 2132040Rhodobacter capsulatus [TaxId:1061] [187497] (3 PDB entries)
    1. Domains for 2bwn:
      1. 2132045Domain d2bwnb_: 2bwn B: [129369]
        Other proteins in same PDB: d2bwna1
        automated match to d2bwna1
        complexed with acy, cl, fmt, plp, sin, so4
      2. 2132046Domain d2bwnd_: 2bwn D: [129370]
        Other proteins in same PDB: d2bwna1
        automated match to d2bwna1
        complexed with acy, cl, fmt, plp, sin, so4
      3. 2132047Domain d2bwne_: 2bwn E: [129371]
        Other proteins in same PDB: d2bwna1
        automated match to d2bwna1
        complexed with acy, cl, fmt, plp, sin, so4
    2. Domains for 2bwo:
      1. 2132048Domain d2bwoa_: 2bwo A: [129372]
        automated match to d2bwna1
        complexed with plp, sca
      2. 2132049Domain d2bwob_: 2bwo B: [129373]
        automated match to d2bwna1
        complexed with plp, sca
      3. 2132050Domain d2bwod_: 2bwo D: [129374]
        automated match to d2bwna1
        complexed with plp, sca
      4. 2132051Domain d2bwoe_: 2bwo E: [129375]
        automated match to d2bwna1
        complexed with plp, sca
    3. Domains for 2bwp:
      1. 2132041Domain d2bwpa_: 2bwp A: [129376]
        automated match to d2bwna1
        complexed with acy, plg
      2. 2132042Domain d2bwpb_: 2bwp B: [129377]
        automated match to d2bwna1
        complexed with acy, plg
      3. 2132043Domain d2bwpd_: 2bwp D: [129378]
        automated match to d2bwna1
        complexed with acy, plg
      4. 2132044Domain d2bwpe_: 2bwp E: [129379]
        automated match to d2bwna1
        complexed with acy, plg
  11. 2132052Salmonella enterica [TaxId:90371] [237706] (1 PDB entry)
  12. 2132054Salmonella typhimurium [TaxId:90371] [188804] (1 PDB entry)
  13. 2132057Staphylococcus aureus [TaxId:93062] [189536] (1 PDB entry)
  14. 2132062Streptococcus thermophilus [TaxId:299768] [270038] (3 PDB entries)
    1. Domains for 4wxb:
      1. 2132065Domain d4wxba_: 4wxb A: [270046]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
      2. 2132066Domain d4wxbb_: 4wxb B: [270042]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
      3. 2132067Domain d4wxbc_: 4wxb C: [270043]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
      4. 2132068Domain d4wxbd_: 4wxb D: [270045]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
    2. Domains for 4wxf:
      1. 2132069Domain d4wxfa_: 4wxf A: [270041]
        automated match to d1dfoa_
        complexed with gol, plg
      2. 2132070Domain d4wxfc_: 4wxf C: [270044]
        automated match to d1dfoa_
        complexed with gol, plg
    3. Domains for 4wxg:
      1. 2132063Domain d4wxga_: 4wxg A: [270039]
        automated match to d1dfoa_
        complexed with 2bo, gol, na
      2. 2132064Domain d4wxgc_: 4wxg C: [270040]
        automated match to d1dfoa_
        complexed with 2bo, gol, na
  15. 2132071Synechococcus elongatus [TaxId:1140] [193337] (1 PDB entry)
  16. 2132073Synechococcus elongatus [TaxId:269084] [187818] (8 PDB entries)
    1. Domains for 2hoy:
      1. 2132082Domain d2hoya_: 2hoy A: [165183]
        automated match to d2gsaa_
        complexed with po4
      2. 2132083Domain d2hoyb_: 2hoy B: [165184]
        automated match to d2gsaa_
        complexed with po4
    2. Domains for 2hoz:
      1. 2132078Domain d2hoza_: 2hoz A: [165185]
        automated match to d2gsaa_
        complexed with hoz, pmp
      2. 2132079Domain d2hozb_: 2hoz B: [165186]
        automated match to d2gsaa_
        complexed with hoz, pmp
    3. Domains for 2hp1:
      1. 2132074Domain d2hp1a_: 2hp1 A: [165187]
        automated match to d2gsaa_
        complexed with ea5, hoz, plp
      2. 2132075Domain d2hp1b_: 2hp1 B: [165188]
        automated match to d2gsaa_
        complexed with ea5, hoz, plp
    4. Domains for 2hp2:
      1. 2132087Domain d2hp2a_: 2hp2 A: [165189]
        automated match to d2gsaa_
        complexed with hoz, ke4, plp
      2. 2132088Domain d2hp2b_: 2hp2 B: [165190]
        automated match to d2gsaa_
        complexed with hoz, ke4, plp
    5. Domains for 3fq7:
      1. 2132080Domain d3fq7a_: 3fq7 A: [175967]
        automated match to d2gsaa_
        complexed with pxg
      2. 2132081Domain d3fq7b_: 3fq7 B: [175968]
        automated match to d2gsaa_
        complexed with pxg
    6. Domains for 3fq8:
      1. 2132076Domain d3fq8a_: 3fq8 A: [175969]
        automated match to d2gsaa_
        complexed with pmp; mutant
      2. 2132077Domain d3fq8b_: 3fq8 B: [175970]
        automated match to d2gsaa_
        complexed with pmp; mutant
    7. Domains for 3fqa:
      1. 2132085Domain d3fqaa_: 3fqa A: [175971]
        automated match to d2gsaa_
        complexed with gab, pmp
      2. 2132086Domain d3fqab_: 3fqa B: [175972]
        automated match to d2gsaa_
        complexed with gab, pmp
    8. Domain for 3usf:
  17. 2132089Thermus thermophilus HB8 [TaxId:300852] [187623] (1 PDB entry)
  18. 2132092Wild boar (Sus scrofa) [311140] (1 PDB entry)
  19. 2132097Yersinia pestis [TaxId:214092] [189635] (1 PDB entry)
  20. 2275153Arabidopsis thaliana [TaxId:3702] [318454] (1 PDB entry)
  21. 2285741Citrobacter rodentium [TaxId:97825] [329042] (1 PDB entry)
  22. 2291057Acinetobacter baumannii [TaxId:470] [334358] (1 PDB entry)

More info for Protein automated matches from c.67.1.4: GABA-aminotransferase-like

Timeline for Protein automated matches from c.67.1.4: GABA-aminotransferase-like: