Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2470823Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2470824Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2471599Family c.67.1.4: GABA-aminotransferase-like [53417] (17 protein domains)
    formerly omega-Aminoacid:pyruvate aminotransferase-like
  6. 2471916Protein automated matches [190152] (22 species)
    not a true protein

Species:

  1. 2471917Acinetobacter baumannii [TaxId:470] [334358] (1 PDB entry)
  2. 2471919Bacillus anthracis [TaxId:261594] [189189] (1 PDB entry)
  3. 2471924Bacillus subtilis [TaxId:1423] [188688] (1 PDB entry)
  4. 2471926Burkholderia cenocepacia [TaxId:216591] [229698] (4 PDB entries)
    1. Domains for 4mso:
      1. 2471927Domain d4msoa_: 4mso A: [229699]
        automated match to d3gbxa_
        complexed with edo, po4
      2. 2471928Domain d4msob_: 4mso B: [229700]
        automated match to d3gbxa_
        complexed with edo, po4
    2. Domains for 4n0w:
      1. 2471929Domain d4n0wa1: 4n0w A:1-415 [235713]
        Other proteins in same PDB: d4n0wa2
        automated match to d4n0wc_
        complexed with plp, so4
      2. 2471930Domain d4n0wb_: 4n0w B: [235714]
        Other proteins in same PDB: d4n0wa2
        automated match to d4n0wc_
        complexed with plp, so4
      3. 2471931Domain d4n0wc_: 4n0w C: [229707]
        Other proteins in same PDB: d4n0wa2
        automated match to d3gbxa_
        complexed with plp, so4
      4. 2471932Domain d4n0wd_: 4n0w D: [235715]
        Other proteins in same PDB: d4n0wa2
        automated match to d4n0wc_
        complexed with plp, so4
    3. Domains for 4ot8:
      1. 2471933Domain d4ot8a_: 4ot8 A: [257323]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
      2. 2471934Domain d4ot8b_: 4ot8 B: [263342]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
      3. 2471935Domain d4ot8c1: 4ot8 C:1-414 [263343]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
      4. 2471936Domain d4ot8d_: 4ot8 D: [263344]
        Other proteins in same PDB: d4ot8c2
        automated match to d4n0wa_
        complexed with plp, ser
    4. Domains for 4otl:
      1. 2471937Domain d4otla_: 4otl A: [267133]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
      2. 2471938Domain d4otlb_: 4otl B: [267134]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
      3. 2471939Domain d4otlc_: 4otl C: [267135]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
      4. 2471940Domain d4otld1: 4otl D:1-415 [267136]
        Other proteins in same PDB: d4otld2
        automated match to d4n0wa_
        complexed with edo, gly, plp
  5. 2471941Burkholderia cepacia [TaxId:292] [186906] (3 PDB entries)
    1. Domain for 1zc9:
    2. Domain for 1zob:
    3. Domain for 1zod:
  6. 2471945Campylobacter jejuni [TaxId:197] [275525] (1 PDB entry)
  7. 2471947Citrobacter rodentium [TaxId:97825] [329042] (1 PDB entry)
  8. 2471949Coxiella burnetii [TaxId:227377] [193632] (1 PDB entry)
  9. 2471952Escherichia coli [TaxId:562] [187107] (1 PDB entry)
  10. 2471954Human (Homo sapiens) [TaxId:9606] [255069] (1 PDB entry)
  11. 2471957Plasmodium falciparum [TaxId:36329] [255985] (1 PDB entry)
  12. 2471962Rhodobacter capsulatus [TaxId:1061] [187497] (3 PDB entries)
    1. Domains for 2bwn:
      1. 2471967Domain d2bwnb_: 2bwn B: [129369]
        Other proteins in same PDB: d2bwna1
        automated match to d2bwna1
        complexed with acy, cl, fmt, plp, sin, so4
      2. 2471968Domain d2bwnd_: 2bwn D: [129370]
        Other proteins in same PDB: d2bwna1
        automated match to d2bwna1
        complexed with acy, cl, fmt, plp, sin, so4
      3. 2471969Domain d2bwne_: 2bwn E: [129371]
        Other proteins in same PDB: d2bwna1
        automated match to d2bwna1
        complexed with acy, cl, fmt, plp, sin, so4
    2. Domains for 2bwo:
      1. 2471970Domain d2bwoa_: 2bwo A: [129372]
        automated match to d2bwna1
        complexed with plp, sca
      2. 2471971Domain d2bwob_: 2bwo B: [129373]
        automated match to d2bwna1
        complexed with plp, sca
      3. 2471972Domain d2bwod_: 2bwo D: [129374]
        automated match to d2bwna1
        complexed with plp, sca
      4. 2471973Domain d2bwoe_: 2bwo E: [129375]
        automated match to d2bwna1
        complexed with plp, sca
    3. Domains for 2bwp:
      1. 2471963Domain d2bwpa_: 2bwp A: [129376]
        automated match to d2bwna1
        complexed with acy, plg
      2. 2471964Domain d2bwpb_: 2bwp B: [129377]
        automated match to d2bwna1
        complexed with acy, plg
      3. 2471965Domain d2bwpd_: 2bwp D: [129378]
        automated match to d2bwna1
        complexed with acy, plg
      4. 2471966Domain d2bwpe_: 2bwp E: [129379]
        automated match to d2bwna1
        complexed with acy, plg
  13. 2471974Salmonella enterica [TaxId:90371] [237706] (1 PDB entry)
  14. 2471976Salmonella typhimurium [TaxId:90371] [188804] (1 PDB entry)
  15. 2471979Staphylococcus aureus [TaxId:93062] [189536] (1 PDB entry)
  16. 2471984Streptococcus thermophilus [TaxId:299768] [270038] (3 PDB entries)
    1. Domains for 4wxb:
      1. 2471987Domain d4wxba_: 4wxb A: [270046]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
      2. 2471988Domain d4wxbb_: 4wxb B: [270042]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
      3. 2471989Domain d4wxbc_: 4wxb C: [270043]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
      4. 2471990Domain d4wxbd_: 4wxb D: [270045]
        automated match to d1dfoa_
        complexed with cac, cit, gol, na
    2. Domains for 4wxf:
      1. 2471991Domain d4wxfa_: 4wxf A: [270041]
        automated match to d1dfoa_
        complexed with gol, plg
      2. 2471992Domain d4wxfc_: 4wxf C: [270044]
        automated match to d1dfoa_
        complexed with gol, plg
    3. Domains for 4wxg:
      1. 2471985Domain d4wxga_: 4wxg A: [270039]
        automated match to d1dfoa_
        complexed with 2bo, gol, na
      2. 2471986Domain d4wxgc_: 4wxg C: [270040]
        automated match to d1dfoa_
        complexed with 2bo, gol, na
  17. 2471993Synechococcus elongatus [TaxId:1140] [193337] (1 PDB entry)
  18. 2471995Synechococcus elongatus [TaxId:269084] [187818] (8 PDB entries)
    1. Domains for 2hoy:
      1. 2472004Domain d2hoya_: 2hoy A: [165183]
        automated match to d2gsaa_
        complexed with po4
      2. 2472005Domain d2hoyb_: 2hoy B: [165184]
        automated match to d2gsaa_
        complexed with po4
    2. Domains for 2hoz:
      1. 2472000Domain d2hoza_: 2hoz A: [165185]
        automated match to d2gsaa_
        complexed with hoz, pmp
      2. 2472001Domain d2hozb_: 2hoz B: [165186]
        automated match to d2gsaa_
        complexed with hoz, pmp
    3. Domains for 2hp1:
      1. 2471996Domain d2hp1a_: 2hp1 A: [165187]
        automated match to d2gsaa_
        complexed with ea5, hoz, plp
      2. 2471997Domain d2hp1b_: 2hp1 B: [165188]
        automated match to d2gsaa_
        complexed with ea5, hoz, plp
    4. Domains for 2hp2:
      1. 2472009Domain d2hp2a_: 2hp2 A: [165189]
        automated match to d2gsaa_
        complexed with hoz, ke4, plp
      2. 2472010Domain d2hp2b_: 2hp2 B: [165190]
        automated match to d2gsaa_
        complexed with hoz, ke4, plp
    5. Domains for 3fq7:
      1. 2472002Domain d3fq7a_: 3fq7 A: [175967]
        automated match to d2gsaa_
        complexed with pxg
      2. 2472003Domain d3fq7b_: 3fq7 B: [175968]
        automated match to d2gsaa_
        complexed with pxg
    6. Domains for 3fq8:
      1. 2471998Domain d3fq8a_: 3fq8 A: [175969]
        automated match to d2gsaa_
        complexed with pmp; mutant
      2. 2471999Domain d3fq8b_: 3fq8 B: [175970]
        automated match to d2gsaa_
        complexed with pmp; mutant
    7. Domains for 3fqa:
      1. 2472007Domain d3fqaa_: 3fqa A: [175971]
        automated match to d2gsaa_
        complexed with gab, pmp
      2. 2472008Domain d3fqab_: 3fqa B: [175972]
        automated match to d2gsaa_
        complexed with gab, pmp
    8. Domain for 3usf:
  19. 2472011Thale cress (Arabidopsis thaliana) [TaxId:3702] [318454] (1 PDB entry)
  20. 2472014Thermus thermophilus HB8 [TaxId:300852] [187623] (1 PDB entry)
  21. 2472017Wild boar (Sus scrofa) [311140] (1 PDB entry)
  22. 2472022Yersinia pestis [TaxId:214092] [189635] (1 PDB entry)

More info for Protein automated matches from c.67.1.4: GABA-aminotransferase-like

Timeline for Protein automated matches from c.67.1.4: GABA-aminotransferase-like: