SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5viqa2 (5viq A:127-314)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2188697Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 2188766Superfamily d.110.2: GAF domain-like [55781] (5 families) (S)
    alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654
  5. 2188887Family d.110.2.0: automated matches [191507] (1 protein)
    not a true family
  6. 2188888Protein automated matches [190838] (13 species)
    not a true protein
  7. 2292001Species Rhodopseudomonas palustris [TaxId:1076] [335302] (1 PDB entry)
  8. 2292002Domain d5viqa2: 5viq A:127-314 [335303]
    Other proteins in same PDB: d5viqa1
    automated match to d2oolb1
    complexed with bla

Details for d5viqa2

PDB Entry: 5viq (more details), 1.34 Å

PDB Description: crystal structure of monomeric near-infrared fluorescent protein mirfp709
PDB Compounds: (A:) monomeric near-infrared fluorescent protein miRFP709

SCOPe Domain Sequences for d5viqa2:

Sequence; same for both SEQRES and ATOM records: (download)

>d5viqa2 d.110.2.0 (A:127-314) automated matches {Rhodopseudomonas palustris [TaxId: 1076]}

SCOPe Domain Coordinates for d5viqa2:

Click to download the PDB-style file with coordinates for d5viqa2.
(The format of our PDB-style files is described here.)

Timeline for d5viqa2:

  • d5viqa2 appears in periodic updates to SCOPe 2.06 starting on 2017-06-08

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