Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2188697Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 2188766Superfamily d.110.2: GAF domain-like [55781] (5 families) (S)
    alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654
  5. 2188887Family d.110.2.0: automated matches [191507] (1 protein)
    not a true family
  6. 2188888Protein automated matches [190838] (13 species)
    not a true protein

Species:

  1. 2188889Arthrobacter aurescens [TaxId:290340] [225953] (1 PDB entry)
  2. 2188892Escherichia coli [TaxId:562] [188153] (2 PDB entries)
    1. Domain for 1ysp:
    2. Domain for 1ysq:
  3. 2188895Neisseria meningitidis [TaxId:604162] [189344] (1 PDB entry)
  4. 2188898Pseudomonas aeruginosa [TaxId:287] [255839] (2 PDB entries)
    1. Domains for 3g6o:
      1. 2188899Domain d3g6oa2: 3g6o A:118-309 [246241]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa2
        complexed with bla; mutant
      2. 2188900Domain d3g6oa3: 3g6o A:310-494 [246242]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa3
        complexed with bla; mutant
      3. 2188901Domain d3g6ob2: 3g6o B:118-309 [246244]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa2
        complexed with bla; mutant
      4. 2188902Domain d3g6ob3: 3g6o B:310-494 [246245]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa3
        complexed with bla; mutant
    2. Domains for 3ibr:
      1. 2188903Domain d3ibra2: 3ibr A:118-309 [246896]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa2
        complexed with bla; mutant
      2. 2188904Domain d3ibra3: 3ibr A:310-494 [246897]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa3
        complexed with bla; mutant
      3. 2188905Domain d3ibrb2: 3ibr B:118-309 [246899]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa2
        complexed with bla; mutant
      4. 2188906Domain d3ibrb3: 3ibr B:310-494 [246900]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa3
        complexed with bla; mutant
  5. 2188907Pseudomonas aeruginosa, PA01 [TaxId:208964] [255984] (1 PDB entry)
  6. 2188909Rhodopseudomonas palustris [TaxId:258594] [226420] (1 PDB entry)
  7. 2188912Staphylococcus aureus [TaxId:282458] [189340] (4 PDB entries)
    1. Domains for 3ksf:
      1. 2188915Domain d3ksfa_: 3ksf A: [179645]
        automated match to d1vhma_
        complexed with peg
      2. 2188916Domain d3ksfb_: 3ksf B: [179646]
        automated match to d1vhma_
        complexed with peg
      3. 2188917Domain d3ksfc_: 3ksf C: [179647]
        automated match to d1vhma_
        complexed with peg
      4. 2188918Domain d3ksfd_: 3ksf D: [179648]
        automated match to d1vhma_
        complexed with peg
      5. 2188919Domain d3ksfe_: 3ksf E: [179649]
        automated match to d1vhma_
        complexed with peg
      6. 2188920Domain d3ksff_: 3ksf F: [179650]
        automated match to d1vhma_
        complexed with peg
      7. 2188921Domain d3ksfg_: 3ksf G: [179651]
        automated match to d1vhma_
        complexed with peg
      8. 2188922Domain d3ksfh_: 3ksf H: [179652]
        automated match to d1vhma_
        complexed with peg
    2. Domains for 3ksg:
      1. 2188923Domain d3ksga_: 3ksg A: [179653]
        automated match to d1vhma_
        complexed with sme
      2. 2188924Domain d3ksgb_: 3ksg B: [179654]
        automated match to d1vhma_
        complexed with sme
    3. Domain for 3ksh:
    4. Domain for 3ksi:
  8. 2188925Streptococcus pneumoniae [TaxId:171101] [195619] (1 PDB entry)
  9. 2188928Synechocystis sp. [TaxId:1148] [256164] (1 PDB entry)
  10. 2188931Thermosynechococcus elongatus [TaxId:197221] [197087] (5 PDB entries)
    1. Domain for 2m7u:
    2. Domain for 2m7v:
    3. Domains for 3vv4:
      1. 2188933Domain d3vv4a_: 3vv4 A: [250697]
        Other proteins in same PDB: d3vv4b2
        automated match to d4fofa_
        complexed with pvg, so4
      2. 2188934Domain d3vv4b1: 3vv4 B:2-158 [250698]
        Other proteins in same PDB: d3vv4b2
        automated match to d4fofa_
        complexed with pvg, so4
    4. Domain for 4fof:
    5. Domain for 4glq:
  11. 2271437Burkholderia vietnamiensis [TaxId:269482] [314740] (1 PDB entry)
  12. 2273994Stigmatella aurantiaca [TaxId:378806] [317295] (2 PDB entries)
    1. Domain for 4rpw:
    2. Domain for 4rq9:
  13. 2292001Rhodopseudomonas palustris [TaxId:1076] [335302] (2 PDB entries)
    1. Domain for 5vik:
    2. Domain for 5viq:

More info for Protein automated matches from d.110.2.0: automated matches

Timeline for Protein automated matches from d.110.2.0: automated matches: