Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2534513Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 2534596Superfamily d.110.2: GAF domain-like [55781] (5 families) (S)
    alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654
  5. 2534717Family d.110.2.0: automated matches [191507] (1 protein)
    not a true family
  6. 2534718Protein automated matches [190838] (14 species)
    not a true protein

Species:

  1. 2534719Arthrobacter aurescens [TaxId:290340] [225953] (1 PDB entry)
  2. 2534722Burkholderia vietnamiensis [TaxId:269482] [314740] (1 PDB entry)
  3. 2534725Escherichia coli [TaxId:562] [188153] (2 PDB entries)
    1. Domain for 1ysp:
    2. Domain for 1ysq:
  4. 2534728Neisseria meningitidis [TaxId:604162] [189344] (1 PDB entry)
  5. 2534731Pseudomonas aeruginosa [TaxId:287] [255839] (2 PDB entries)
    1. Domains for 3g6o:
      1. 2534732Domain d3g6oa2: 3g6o A:118-309 [246241]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa2
        complexed with bla; mutant
      2. 2534733Domain d3g6oa3: 3g6o A:310-494 [246242]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa3
        complexed with bla; mutant
      3. 2534734Domain d3g6ob2: 3g6o B:118-309 [246244]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa2
        complexed with bla; mutant
      4. 2534735Domain d3g6ob3: 3g6o B:310-494 [246245]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa3
        complexed with bla; mutant
    2. Domains for 3ibr:
      1. 2534736Domain d3ibra2: 3ibr A:118-309 [246896]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa2
        complexed with bla; mutant
      2. 2534737Domain d3ibra3: 3ibr A:310-494 [246897]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa3
        complexed with bla; mutant
      3. 2534738Domain d3ibrb2: 3ibr B:118-309 [246899]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa2
        complexed with bla; mutant
      4. 2534739Domain d3ibrb3: 3ibr B:310-494 [246900]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa3
        complexed with bla; mutant
  6. 2534740Pseudomonas aeruginosa, PA01 [TaxId:208964] [255984] (1 PDB entry)
  7. 2534742Rhodopseudomonas palustris [TaxId:1076] [335302] (2 PDB entries)
    1. Domain for 5vik:
    2. Domain for 5viq:
  8. 2534745Rhodopseudomonas palustris [TaxId:258594] [226420] (1 PDB entry)
  9. 2534748Staphylococcus aureus [TaxId:282458] [189340] (4 PDB entries)
    1. Domains for 3ksf:
      1. 2534751Domain d3ksfa_: 3ksf A: [179645]
        automated match to d1vhma_
        complexed with peg
      2. 2534752Domain d3ksfb_: 3ksf B: [179646]
        automated match to d1vhma_
        complexed with peg
      3. 2534753Domain d3ksfc_: 3ksf C: [179647]
        automated match to d1vhma_
        complexed with peg
      4. 2534754Domain d3ksfd_: 3ksf D: [179648]
        automated match to d1vhma_
        complexed with peg
      5. 2534755Domain d3ksfe_: 3ksf E: [179649]
        automated match to d1vhma_
        complexed with peg
      6. 2534756Domain d3ksff_: 3ksf F: [179650]
        automated match to d1vhma_
        complexed with peg
      7. 2534757Domain d3ksfg_: 3ksf G: [179651]
        automated match to d1vhma_
        complexed with peg
      8. 2534758Domain d3ksfh_: 3ksf H: [179652]
        automated match to d1vhma_
        complexed with peg
    2. Domains for 3ksg:
      1. 2534759Domain d3ksga_: 3ksg A: [179653]
        automated match to d1vhma_
        complexed with sme
      2. 2534760Domain d3ksgb_: 3ksg B: [179654]
        automated match to d1vhma_
        complexed with sme
    3. Domain for 3ksh:
    4. Domain for 3ksi:
  10. 2534761Stigmatella aurantiaca [TaxId:378806] [317295] (2 PDB entries)
    1. Domain for 4rpw:
    2. Domain for 4rq9:
  11. 2534764Streptococcus pneumoniae [TaxId:171101] [195619] (1 PDB entry)
  12. 2534767Synechocystis sp. [TaxId:1148] [256164] (1 PDB entry)
  13. 2534770Thermosynechococcus elongatus [TaxId:197221] [197087] (5 PDB entries)
    1. Domain for 2m7u:
    2. Domain for 2m7v:
    3. Domains for 3vv4:
      1. 2534771Domain d3vv4a_: 3vv4 A: [250697]
        Other proteins in same PDB: d3vv4b2
        automated match to d4fofa_
        complexed with pvg, so4
      2. 2534772Domain d3vv4b1: 3vv4 B:2-158 [250698]
        Other proteins in same PDB: d3vv4b2
        automated match to d4fofa_
        complexed with pvg, so4
    4. Domain for 4fof:
    5. Domain for 4glq:
  14. 3051069Nostoc punctiforme [TaxId:63737] [351131] (2 PDB entries)
    1. Domain for 6bhn:
    2. Domain for 6bho:

More info for Protein automated matches from d.110.2.0: automated matches

Timeline for Protein automated matches from d.110.2.0: automated matches: