SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2188697Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 2188766Superfamily d.110.2: GAF domain-like [55781] (5 families) (S)
    alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654
  5. 2188887Family d.110.2.0: automated matches [191507] (1 protein)
    not a true family
  6. 2188888Protein automated matches [190838] (13 species)
    not a true protein

Species:

  1. 2188889Arthrobacter aurescens [TaxId:290340] [225953] (1 PDB entry)
  2. 2188892Escherichia coli [TaxId:562] [188153] (2 PDB entries)
    1. Domain for 1ysp:
    2. Domain for 1ysq:
  3. 2188895Neisseria meningitidis [TaxId:604162] [189344] (1 PDB entry)
  4. 2188898Pseudomonas aeruginosa [TaxId:287] [255839] (2 PDB entries)
    1. Domains for 3g6o:
      1. 2188899Domain d3g6oa2: 3g6o A:118-309 [246241]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa2
        complexed with bla; mutant
      2. 2188900Domain d3g6oa3: 3g6o A:310-494 [246242]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa3
        complexed with bla; mutant
      3. 2188901Domain d3g6ob2: 3g6o B:118-309 [246244]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa2
        complexed with bla; mutant
      4. 2188902Domain d3g6ob3: 3g6o B:310-494 [246245]
        Other proteins in same PDB: d3g6oa1, d3g6ob1
        automated match to d3nhqa3
        complexed with bla; mutant
    2. Domains for 3ibr:
      1. 2188903Domain d3ibra2: 3ibr A:118-309 [246896]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa2
        complexed with bla; mutant
      2. 2188904Domain d3ibra3: 3ibr A:310-494 [246897]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa3
        complexed with bla; mutant
      3. 2188905Domain d3ibrb2: 3ibr B:118-309 [246899]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa2
        complexed with bla; mutant
      4. 2188906Domain d3ibrb3: 3ibr B:310-494 [246900]
        Other proteins in same PDB: d3ibra1, d3ibrb1
        automated match to d3nhqa3
        complexed with bla; mutant
  5. 2188907Pseudomonas aeruginosa, PA01 [TaxId:208964] [255984] (1 PDB entry)
  6. 2188909Rhodopseudomonas palustris [TaxId:258594] [226420] (1 PDB entry)
  7. 2188912Staphylococcus aureus [TaxId:282458] [189340] (4 PDB entries)
    1. Domains for 3ksf:
      1. 2188915Domain d3ksfa_: 3ksf A: [179645]
        automated match to d1vhma_
        complexed with peg
      2. 2188916Domain d3ksfb_: 3ksf B: [179646]
        automated match to d1vhma_
        complexed with peg
      3. 2188917Domain d3ksfc_: 3ksf C: [179647]
        automated match to d1vhma_
        complexed with peg
      4. 2188918Domain d3ksfd_: 3ksf D: [179648]
        automated match to d1vhma_
        complexed with peg
      5. 2188919Domain d3ksfe_: 3ksf E: [179649]
        automated match to d1vhma_
        complexed with peg
      6. 2188920Domain d3ksff_: 3ksf F: [179650]
        automated match to d1vhma_
        complexed with peg
      7. 2188921Domain d3ksfg_: 3ksf G: [179651]
        automated match to d1vhma_
        complexed with peg
      8. 2188922Domain d3ksfh_: 3ksf H: [179652]
        automated match to d1vhma_
        complexed with peg
    2. Domains for 3ksg:
      1. 2188923Domain d3ksga_: 3ksg A: [179653]
        automated match to d1vhma_
        complexed with sme
      2. 2188924Domain d3ksgb_: 3ksg B: [179654]
        automated match to d1vhma_
        complexed with sme
    3. Domain for 3ksh:
    4. Domain for 3ksi:
  8. 2188925Streptococcus pneumoniae [TaxId:171101] [195619] (1 PDB entry)
  9. 2188928Synechocystis sp. [TaxId:1148] [256164] (1 PDB entry)
  10. 2188931Thermosynechococcus elongatus [TaxId:197221] [197087] (5 PDB entries)
    1. Domain for 2m7u:
    2. Domain for 2m7v:
    3. Domains for 3vv4:
      1. 2188933Domain d3vv4a_: 3vv4 A: [250697]
        Other proteins in same PDB: d3vv4b2
        automated match to d4fofa_
        complexed with pvg, so4
      2. 2188934Domain d3vv4b1: 3vv4 B:2-158 [250698]
        Other proteins in same PDB: d3vv4b2
        automated match to d4fofa_
        complexed with pvg, so4
    4. Domain for 4fof:
    5. Domain for 4glq:
  11. 2271437Burkholderia vietnamiensis [TaxId:269482] [314740] (1 PDB entry)
  12. 2273994Stigmatella aurantiaca [TaxId:378806] [317295] (2 PDB entries)
    1. Domain for 4rpw:
    2. Domain for 4rq9:
  13. 2292001Rhodopseudomonas palustris [TaxId:1076] [335302] (1 PDB entry)

More info for Protein automated matches from d.110.2.0: automated matches

Timeline for Protein automated matches from d.110.2.0: automated matches: