SCOPe 2.08: Domain d4jm2e_: 4jm2 E:

Lineage for d4jm2e_ (4jm2 E:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.172: gp120 core [56501] (1 superfamily)
   unusual fold

4. Superfamily d.172.1: gp120 core [56502] (1 family)

5. Family d.172.1.1: gp120 core [56503] (2 proteins)

6. Protein automated matches [190166] (1 species)
   not a true protein

7. Species Human immunodeficiency virus 1 [TaxId:11676] [186893] (4 PDB entries)

8. Domain d4jm2e_: 4jm2 E: [252984]
   Other proteins in same PDB: d4jm2a_, d4jm2b1, d4jm2b2, d4jm2c1, d4jm2c2, d4jm2f1, d4jm2f2
   automated match to d2b4cg1
   complexed with nag, pg4

Details for d4jm2e_

PDB Entry: 4jm2, 3.1 Å

PDB Description: crystal structure of pgt 135 fab in complex with gp120 core protein from hiv-1 strain jr-fl bound to cd4 and 17b fab

PDB Compounds: (E:) gp120

SCOPe Domain Sequences for d4jm2e_:

Sequence, based on SEQRES records:

>d4jm2e_ d.172.1.1 (E:) automated matches {Human immunodeficiency virus 1 [TaxId: 11676]}
vtehfnmwknnmveqmqediislwdqslkpcvkltplcvgsgscdtsvitqacpkisfep
ipihycapagfailkcndktfngkgpcknvstvqcthgirpvvstqlllngslaeeevvi
rsdnftnnaktiivqlkesveinctrpnnntrpgeiigdirqahcnisrakwndtlkqiv
iklreqfenktivfnhssggdpeivmhsfncggeffycnstqlfnstwnnntegsnnteg
ntitlpcrikqiinmwqevgkamyappirgqircssnitgllltrdgginengteifrpg
ggdmrdnwrselykykvvki

Sequence, based on observed residues (ATOM records):

>d4jm2e_ d.172.1.1 (E:) automated matches {Human immunodeficiency virus 1 [TaxId: 11676]}
vtehfnmwknnmveqmqediislwdqslkpcvkltplcvgsgscdtsvitqacpkisfep
ipihycapagfailkcndktfngkgpcknvstvqcthgirpvvstqlllngslaeeevvi
rsdnftnnaktiivqlkesveinctrpnnntigdirqahcnisrakwndtlkqiviklre
qfenktivfnhssggdpeivmhsfncggeffycnstqlfnstwnnntegsnntegntitl
pcrikqiinmwqevgkamyappirgqircssnitgllltrdgginengteifrpgggdmr
dnwrselykykvvki

Timeline for d4jm2e_:

• d4jm2e_ first appeared in SCOPe 2.04
  
• d4jm2e_ appears in SCOPe 2.07