SCOPe 2.08: Domain d4jm2b1: 4jm2 B:1-106

Lineage for d4jm2b1 (4jm2 B:1-106)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.1: Immunoglobulin [48726] (5 families)

5. Family b.1.1.0: automated matches [191470] (1 protein)
   not a true family

6. Protein automated matches [190740] (31 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [187920] (1793 PDB entries)

8. Domain d4jm2b1: 4jm2 B:1-106 [252980]
   Other proteins in same PDB: d4jm2b2, d4jm2c1, d4jm2c2, d4jm2e_, d4jm2f1, d4jm2f2
   automated match to d1dn0a1
   complexed with nag, pg4

Details for d4jm2b1

PDB Entry: 4jm2, 3.1 Å

PDB Description: crystal structure of pgt 135 fab in complex with gp120 core protein from hiv-1 strain jr-fl bound to cd4 and 17b fab

PDB Compounds: (B:) PGT 135 Light Chain

SCOPe Domain Sequences for d4jm2b1:

Sequence; same for both SEQRES and ATOM records:

>d4jm2b1 b.1.1.0 (B:1-106) automated matches {Human (Homo sapiens) [TaxId: 9606]}
eivmtqspdtlsvspgetvtlscrasqninknlawyqykpgqsprlvifetyskiaafpa
rfvasgsgteftltinnmqsedvavyycqqyeewprtfgqgtkvdi

Timeline for d4jm2b1:

• d4jm2b1 first appeared in SCOPe 2.04
  
• d4jm2b1 appears in SCOPe 2.07