Species:

1. Bacillus megaterium [TaxId:1404] [314644] (1 PDB entry)

   • Domains for 5hdj:

     1. Domain d5hdja_: 5hdj A: [314722] automated match to d1zcha1 complexed with edo, fmn

     2. Domain d5hdjb_: 5hdj B: [314645] automated match to d1zcha1 complexed with edo, fmn

2. Bacillus subtilis [TaxId:1423] [188288] (2 PDB entries)

   1. Domains for 3bem:

      1. Domain d3bema1: 3bem A:1-206 [172571] Other proteins in same PDB: d3bema2, d3bemb2 automated match to d2b67a1 complexed with act, fmn, ni, pgo

      2. Domain d3bemb1: 3bem B:1-206 [172572] Other proteins in same PDB: d3bema2, d3bemb2 automated match to d2b67a1 complexed with act, fmn, ni, pgo

   2. Domains for 3n2s:

      1. Domain d3n2sa_: 3n2s A: [181848] automated match to d1bkja_ complexed with cl, fmn

      2. Domain d3n2sb_: 3n2s B: [181849] automated match to d1bkja_ complexed with cl, fmn

      3. Domain d3n2sc_: 3n2s C: [181850] automated match to d1bkja_ complexed with cl, fmn

      4. Domain d3n2sd_: 3n2s D: [181851] automated match to d1bkja_ complexed with cl, fmn

3. Bacteroides fragilis [TaxId:272559] [188633] (1 PDB entry)

   • Domains for 3eof:

     1. Domain d3eofa1: 3eof A:1-247 [175116] Other proteins in same PDB: d3eofa2 automated match to d1zcha1 complexed with fmn

     2. Domain d3eofb_: 3eof B: [175117] Other proteins in same PDB: d3eofa2 automated match to d1zcha1 complexed with fmn

4. Bacteroides thetaiotaomicron [TaxId:226186] [232733] (1 PDB entry)

   • Domain for 3kwk:

     • Domain d3kwka_: 3kwk A: [232734] automated match to d4dn2b_ complexed with cl, fmn, unl

5. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [271985] (1 PDB entry)

   • Domains for 4urp:

     1. Domain d4urpa_: 4urp A: [271986] automated match to d1ywqa1 mutant

     2. Domain d4urpb_: 4urp B: [271987] automated match to d1ywqa1 mutant

6. Bartonella henselae [TaxId:283166] [267839] (1 PDB entry)

   • Domains for 3gr3:

     1. Domain d3gr3a_: 3gr3 A: [264811] automated match to d3gbhc_ complexed with act, cl, edo, fmn, unl

     2. Domain d3gr3b_: 3gr3 B: [264812] automated match to d3gbhc_ complexed with act, cl, edo, fmn, unl

7. Clostridium acetobutylicum [TaxId:1488] [255806] (1 PDB entry)

   • Domains for 3e10:

     1. Domain d3e10a_: 3e10 A: [245744] automated match to d3kwka_ complexed with edo, epe, fmn

     2. Domain d3e10b_: 3e10 B: [245745] automated match to d3kwka_ complexed with edo, epe, fmn

8. Clostridium difficile [TaxId:272563] [196092] (3 PDB entries)

   1. Domains for 3eo8:

      1. Domain d3eo8a1: 3eo8 A:1-218 [199349] Other proteins in same PDB: d3eo8a2, d3eo8b2, d3eo8c2, d3eo8d2, d3eo8e2, d3eo8f2 automated match to d3eo8f_ complexed with act, cl, fmn, gol

      2. Domain d3eo8b1: 3eo8 B:1-218 [199350] Other proteins in same PDB: d3eo8a2, d3eo8b2, d3eo8c2, d3eo8d2, d3eo8e2, d3eo8f2 automated match to d3eo8f_ complexed with act, cl, fmn, gol

      3. Domain d3eo8c1: 3eo8 C:1-218 [199351] Other proteins in same PDB: d3eo8a2, d3eo8b2, d3eo8c2, d3eo8d2, d3eo8e2, d3eo8f2 automated match to d3eo8f_ complexed with act, cl, fmn, gol

      4. Domain d3eo8d1: 3eo8 D:1-218 [199352] Other proteins in same PDB: d3eo8a2, d3eo8b2, d3eo8c2, d3eo8d2, d3eo8e2, d3eo8f2 automated match to d3eo8f_ complexed with act, cl, fmn, gol

      5. Domain d3eo8e1: 3eo8 E:1-218 [199353] Other proteins in same PDB: d3eo8a2, d3eo8b2, d3eo8c2, d3eo8d2, d3eo8e2, d3eo8f2 automated match to d3eo8f_ complexed with act, cl, fmn, gol

      6. Domain d3eo8f1: 3eo8 F:1-218 [196093] Other proteins in same PDB: d3eo8a2, d3eo8b2, d3eo8c2, d3eo8d2, d3eo8e2, d3eo8f2 automated match to d2hayc_ complexed with act, cl, fmn, gol

   2. Domain for 3h4o:

      • Domain d3h4oa_: 3h4o A: [210878] automated match to d2b67a1 complexed with fmn, mpd, mrd

   3. Domains for 3koq:

      1. Domain d3koqa1: 3koq A:1-172 [212479] Other proteins in same PDB: d3koqa2 automated match to d2b67a1 complexed with cl, fmn, gol

      2. Domain d3koqb_: 3koq B: [212480] Other proteins in same PDB: d3koqa2 automated match to d2b67a1 complexed with cl, fmn, gol

      3. Domain d3koqc_: 3koq C: [212481] Other proteins in same PDB: d3koqa2 automated match to d2b67a1 complexed with cl, fmn, gol

      4. Domain d3koqd_: 3koq D: [212482] Other proteins in same PDB: d3koqa2 automated match to d2b67a1 complexed with cl, fmn, gol

9. Clostridium novyi [TaxId:386415] [225610] (1 PDB entry)

   • Domains for 3g14:

     1. Domain d3g14a_: 3g14 A: [210305] automated match to d3gbhc_ complexed with act, gol, so4

     2. Domain d3g14b_: 3g14 B: [210306] automated match to d3gbhc_ complexed with act, gol, so4

10. Desulfitobacterium hafniense [TaxId:272564] [233297] (1 PDB entry)

    • Domains for 3pxv:

      1. Domain d3pxva_: 3pxv A: [233298] Other proteins in same PDB: d3pxvb2, d3pxvd2 automated match to d3eo8f_ complexed with fmn

      2. Domain d3pxvb1: 3pxv B:1-188 [233299] Other proteins in same PDB: d3pxvb2, d3pxvd2 automated match to d3eo8f_ complexed with fmn

      3. Domain d3pxvc_: 3pxv C: [233300] Other proteins in same PDB: d3pxvb2, d3pxvd2 automated match to d3eo8f_ complexed with fmn

      4. Domain d3pxvd1: 3pxv D:1-188 [233301] Other proteins in same PDB: d3pxvb2, d3pxvd2 automated match to d3eo8f_ complexed with fmn

11. Exiguobacterium sibiricum [TaxId:262543] [188806] (1 PDB entry)

    • Domains for 3ge6:

      1. Domain d3ge6a_: 3ge6 A: [176567] automated match to d2b67a1 complexed with fmn

      2. Domain d3ge6b_: 3ge6 B: [176568] automated match to d2b67a1 complexed with fmn

12. Geobacter metallireducens [TaxId:269799] [226309] (1 PDB entry)

    • Domains for 4dn2:

      1. Domain d4dn2a1: 4dn2 A:1-185 [219867] Other proteins in same PDB: d4dn2a2, d4dn2b2 automated match to d3bema_ complexed with fmn

      2. Domain d4dn2b1: 4dn2 B:1-186 [219868] Other proteins in same PDB: d4dn2a2, d4dn2b2 automated match to d3bema_ complexed with fmn

13. Geobacter sulfurreducens [TaxId:243231] [226431] (1 PDB entry)

    • Domains for 4g8s:

      1. Domain d4g8sa1: 4g8s A:1-187 [221787] Other proteins in same PDB: d4g8sa2, d4g8sb2 automated match to d2b67a1 complexed with fmn, gol

      2. Domain d4g8sb1: 4g8s B:1-186 [221788] Other proteins in same PDB: d4g8sa2, d4g8sb2 automated match to d2b67a1 complexed with fmn, gol

14. Haemophilus influenzae [TaxId:262727] [399592] (1 PDB entry)

    • Domain for 7ldq:

      • Domain d7ldqa1: 7ldq A:1-220 [399593] Other proteins in same PDB: d7ldqa2 automated match to d2hayb_ complexed with acy, ca, cl, fmn, fmt

15. Helicobacter pylori [TaxId:210] [187778] (2 PDB entries)

    1. Domain for 2h0u:

       • Domain d2h0ua_: 2h0u A: [164891] automated match to d1v5ya1 complexed with fmn

    2. Domains for 3qdl:

       1. Domain d3qdla_: 3qdl A: [215186] automated match to d3ge6a_ complexed with fmn, gol

       2. Domain d3qdlb_: 3qdl B: [215187] automated match to d3ge6a_ complexed with fmn, gol

       3. Domain d3qdlc_: 3qdl C: [215188] automated match to d3ge6a_ complexed with fmn, gol

       4. Domain d3qdld_: 3qdl D: [215189] automated match to d3ge6a_ complexed with fmn, gol

16. Idiomarina loihiensis [TaxId:135577] [189444] (1 PDB entry)

    • Domains for 3of4:

      1. Domain d3of4a_: 3of4 A: [182988] automated match to d1kqba_ complexed with act, fad, fmn, gol, so4, unl

      2. Domain d3of4b_: 3of4 B: [182989] automated match to d1kqba_ complexed with act, fad, fmn, gol, so4, unl

      3. Domain d3of4c_: 3of4 C: [182990] automated match to d1kqba_ complexed with act, fad, fmn, gol, so4, unl

17. Lactobacillus plantarum [TaxId:1590] [269281] (2 PDB entries)

    1. Domains for 4qlx:

       1. Domain d4qlxa_: 4qlx A: [269288] automated match to d3gbha_ complexed with cl, fmn, ktc

       2. Domain d4qlxb_: 4qlx B: [269287] automated match to d3gbha_ complexed with cl, fmn, ktc

    2. Domains for 4qly:

       1. Domain d4qlya_: 4qly A: [269284] automated match to d3gbha_ complexed with fmn

       2. Domain d4qlyb_: 4qly B: [269283] automated match to d3gbha_ complexed with fmn

       3. Domain d4qlyc_: 4qly C: [269286] automated match to d3gbha_ complexed with fmn

       4. Domain d4qlyd_: 4qly D: [269282] automated match to d3gbha_ complexed with fmn

18. Lactococcus lactis [TaxId:1358] [189386] (6 PDB entries)

    1. Domain for 2wqf:

       • Domain d2wqfa_: 2wqf A: [169566] automated match to d2ifaa1 complexed with fmn

    2. Domain for 4bn6:

       • Domain d4bn6a_: 4bn6 A: [256565] automated match to d2wqfa_ complexed with clm, fmn

    3. Domain for 4bn7:

       • Domain d4bn7a_: 4bn7 A: [265940] automated match to d2wqfa_ complexed with fmn, rlm

    4. Domain for 4bn8:

       • Domain d4bn8a_: 4bn8 A: [265941] automated match to d2wqfa_ complexed with fmn, npo

    5. Domain for 4bn9:

       • Domain d4bn9a_: 4bn9 A: [265942] automated match to d2wqfa_ complexed with fmn, nio

    6. Domain for 4bnb:

       • Domain d4bnba_: 4bnb A: [265943] automated match to d2wqfa_ complexed with fmn, yhx

19. Mycobacterium smegmatis [TaxId:246196] [311252] (2 PDB entries)

    1. Domains for 2wzv:

       1. Domain d2wzva_: 2wzv A: [304617] automated match to d3gr3a_ complexed with fmn, gol, po4

       2. Domain d2wzvb_: 2wzv B: [304618] automated match to d3gr3a_ complexed with fmn, gol, po4

    2. Domains for 2wzw:

       1. Domain d2wzwa_: 2wzw A: [304619] automated match to d3gr3a_ complexed with fmn, ndp, po4

       2. Domain d2wzwb_: 2wzw B: [304620] automated match to d3gr3a_ complexed with fmn, ndp, po4

20. Neisseria meningitidis [TaxId:122587] [385679] (1 PDB entry)

    • Domains for 6wt2:

      1. Domain d6wt2a_: 6wt2 A: [385680] automated match to d3qdla_ complexed with cl, edo, fmn, fmt, nio

      2. Domain d6wt2b_: 6wt2 B: [385704] automated match to d3qdla_ complexed with cl, edo, fmn, fmt, nio

      3. Domain d6wt2c_: 6wt2 C: [385686] automated match to d3qdla_ complexed with cl, edo, fmn, fmt, nio

      4. Domain d6wt2d_: 6wt2 D: [385687] automated match to d3qdla_ complexed with cl, edo, fmn, fmt, nio

21. Parabacteroides distasonis [TaxId:435591] [232883] (1 PDB entry)

    • Domains for 3m5k:

      1. Domain d3m5ka_: 3m5k A: [232884] automated match to d4dn2b_ complexed with cl, fmn, unl

      2. Domain d3m5kb_: 3m5k B: [239456] automated match to d3m5ka_ complexed with cl, fmn, unl

22. Peptoclostridium difficile [TaxId:645463] [322996] (1 PDB entry)

    • Domains for 5j6c:

      1. Domain d5j6ca_: 5j6c A: [323012] automated match to d3e10b_ complexed with fmn, imd

      2. Domain d5j6cb_: 5j6c B: [322997] automated match to d3e10b_ complexed with fmn, imd

23. Porphyromonas gingivalis [TaxId:242619] [232279] (1 PDB entry)

    • Domains for 3ge5:

      1. Domain d3ge5a_: 3ge5 A: [232280] automated match to d4dn2a_ complexed with edo, fmn, so4, unl

      2. Domain d3ge5b_: 3ge5 B: [232281] automated match to d4dn2a_ complexed with edo, fmn, so4, unl

24. Staphylococcus aureus [TaxId:46170] [390184] (1 PDB entry)

    • Domains for 7jh4:

      1. Domain d7jh4a_: 7jh4 A: [390186] automated match to d2haya_ complexed with fnr, nad

      2. Domain d7jh4b_: 7jh4 B: [390203] automated match to d2haya_ complexed with fnr, nad

      3. Domain d7jh4c_: 7jh4 C: [390190] automated match to d2haya_ complexed with fnr, nad

      4. Domain d7jh4d_: 7jh4 D: [390185] automated match to d2haya_ complexed with fnr, nad

      5. Domain d7jh4e_: 7jh4 E: [390286] automated match to d2haya_ complexed with fnr, nad

25. Staphylococcus epidermidis [TaxId:176280] [188805] (1 PDB entry)

    • Domains for 3gbh:

      1. Domain d3gbha_: 3gbh A: [176492] Other proteins in same PDB: d3gbhb2 automated match to d2b67a1 complexed with ca, fmn, gol, pge, unl

      2. Domain d3gbhb1: 3gbh B:1-212 [176493] Other proteins in same PDB: d3gbhb2 automated match to d2b67a1 complexed with ca, fmn, gol, pge, unl

      3. Domain d3gbhc_: 3gbh C: [176494] Other proteins in same PDB: d3gbhb2 automated match to d2b67a1 complexed with ca, fmn, gol, pge, unl

      4. Domain d3gbhd_: 3gbh D: [176495] Other proteins in same PDB: d3gbhb2 automated match to d2b67a1 complexed with ca, fmn, gol, pge, unl

26. Streptococcus mutans [TaxId:1309] [188802] (1 PDB entry)

    • Domains for 3gag:

      1. Domain d3gaga1: 3gag A:1-205 [176472] Other proteins in same PDB: d3gaga2, d3gagc2 automated match to d2b67a1 complexed with fmn, gol, so4

      2. Domain d3gagb_: 3gag B: [176473] Other proteins in same PDB: d3gaga2, d3gagc2 automated match to d2b67a1 complexed with fmn, gol, so4

      3. Domain d3gagc1: 3gag C:1-205 [176474] Other proteins in same PDB: d3gaga2, d3gagc2 automated match to d2b67a1 complexed with fmn, gol, so4

      4. Domain d3gagd_: 3gag D: [176475] Other proteins in same PDB: d3gaga2, d3gagc2 automated match to d2b67a1 complexed with fmn, gol, so4

27. Streptococcus pyogenes [TaxId:301447] [187797] (1 PDB entry)

    • Domains for 2hay:

      1. Domain d2haya_: 2hay A: [165038] Other proteins in same PDB: d2hayd2 automated match to d1v5ya1 complexed with fmn, so4

      2. Domain d2hayb_: 2hay B: [165039] Other proteins in same PDB: d2hayd2 automated match to d1v5ya1 complexed with fmn, so4

      3. Domain d2hayc_: 2hay C: [165040] Other proteins in same PDB: d2hayd2 automated match to d1v5ya1 complexed with fmn, so4

      4. Domain d2hayd1: 2hay D:1-221 [165041] Other proteins in same PDB: d2hayd2 automated match to d1v5ya1 complexed with fmn, so4

28. Thermotoga neapolitana [TaxId:309803] [400117] (4 PDB entries)

    1. Domains for 6pz0:

       1. Domain d6pz0a_: 6pz0 A: [400134] automated match to d2b67a1 complexed with cl, fmn, tyr

       2. Domain d6pz0b_: 6pz0 B: [400119] automated match to d2b67a1 complexed with cl, fmn, tyr

    2. Domains for 6q1b:

       1. Domain d6q1ba_: 6q1b A: [400118] automated match to d2b67a1 complexed with cl, fmn, yof

       2. Domain d6q1bb_: 6q1b B: [400120] automated match to d2b67a1 complexed with cl, fmn, yof

    3. Domains for 6q1l:

       1. Domain d6q1la_: 6q1l A: [402565] automated match to d2b67a1 complexed with cl, fmn, iyr

       2. Domain d6q1lb_: 6q1l B: [402578] automated match to d2b67a1 complexed with cl, fmn, iyr

    4. Domains for 6tyk:

       1. Domain d6tyka_: 6tyk A: [402804] automated match to d2b67a1 complexed with cl, fmn, iyr

       2. Domain d6tykb_: 6tyk B: [402760] automated match to d2b67a1 complexed with cl, fmn, iyr

29. Vibrio parahaemolyticus [TaxId:223926] [330502] (1 PDB entry)

    • Domains for 5uu6:

      1. Domain d5uu6a1: 5uu6 A:1-240 [330520] Other proteins in same PDB: d5uu6a2, d5uu6c2, d5uu6d2 automated match to d1f5va_ complexed with cl, fmn, gol

      2. Domain d5uu6b_: 5uu6 B: [330503] Other proteins in same PDB: d5uu6a2, d5uu6c2, d5uu6d2 automated match to d1f5va_ complexed with cl, fmn, gol

      3. Domain d5uu6c1: 5uu6 C:1-240 [330552] Other proteins in same PDB: d5uu6a2, d5uu6c2, d5uu6d2 automated match to d1f5va_ complexed with cl, fmn, gol

      4. Domain d5uu6d1: 5uu6 D:1-240 [330544] Other proteins in same PDB: d5uu6a2, d5uu6c2, d5uu6d2 automated match to d1f5va_ complexed with cl, fmn, gol

More info for Protein automated matches from d.90.1.0: automated matches

Timeline for Protein automated matches from d.90.1.0: automated matches:

• Protein automated matches from d.90.1.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from d.90.1.0: automated matches appears in SCOPe 2.06
  
• Protein automated matches from d.90.1.0: automated matches appears in the current release, SCOPe 2.08