Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2528714Fold d.90: FMN-dependent nitroreductase-like [55468] (1 superfamily)
    core: (alpha-beta-alpha-beta)2; 3 layers a/b/a; antiparallel beta-sheet: 1243
  4. 2528715Superfamily d.90.1: FMN-dependent nitroreductase-like [55469] (3 families) (S)
  5. 2528862Family d.90.1.0: automated matches [191446] (1 protein)
    not a true family
  6. 2528863Protein automated matches [190672] (25 species)
    not a true protein

Species:

  1. 2528864Bacillus megaterium [TaxId:1404] [314644] (1 PDB entry)
  2. 2528867Bacillus subtilis [TaxId:1423] [188288] (2 PDB entries)
    1. Domains for 3bem:
      1. 2528872Domain d3bema1: 3bem A:1-206 [172571]
        Other proteins in same PDB: d3bema2, d3bemb2
        automated match to d2b67a1
        complexed with act, fmn, ni, pgo
      2. 2528873Domain d3bemb1: 3bem B:1-206 [172572]
        Other proteins in same PDB: d3bema2, d3bemb2
        automated match to d2b67a1
        complexed with act, fmn, ni, pgo
    2. Domains for 3n2s:
      1. 2528868Domain d3n2sa_: 3n2s A: [181848]
        automated match to d1bkja_
        complexed with cl, fmn
      2. 2528869Domain d3n2sb_: 3n2s B: [181849]
        automated match to d1bkja_
        complexed with cl, fmn
      3. 2528870Domain d3n2sc_: 3n2s C: [181850]
        automated match to d1bkja_
        complexed with cl, fmn
      4. 2528871Domain d3n2sd_: 3n2s D: [181851]
        automated match to d1bkja_
        complexed with cl, fmn
  3. 2528874Bacteroides fragilis [TaxId:272559] [188633] (1 PDB entry)
  4. 2528877Bacteroides thetaiotaomicron [TaxId:226186] [232733] (1 PDB entry)
  5. 2528879Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [271985] (1 PDB entry)
  6. 2528882Bartonella henselae [TaxId:283166] [267839] (1 PDB entry)
  7. 2528885Clostridium acetobutylicum [TaxId:1488] [255806] (1 PDB entry)
  8. 2528888Clostridium difficile [TaxId:272563] [196092] (3 PDB entries)
    1. Domains for 3eo8:
      1. 2528894Domain d3eo8a1: 3eo8 A:1-218 [199349]
        Other proteins in same PDB: d3eo8a2, d3eo8b2, d3eo8c2, d3eo8d2, d3eo8e2, d3eo8f2
        automated match to d3eo8f_
        complexed with act, cl, fmn, gol
      2. 2528895Domain d3eo8b1: 3eo8 B:1-218 [199350]
        Other proteins in same PDB: d3eo8a2, d3eo8b2, d3eo8c2, d3eo8d2, d3eo8e2, d3eo8f2
        automated match to d3eo8f_
        complexed with act, cl, fmn, gol
      3. 2528896Domain d3eo8c1: 3eo8 C:1-218 [199351]
        Other proteins in same PDB: d3eo8a2, d3eo8b2, d3eo8c2, d3eo8d2, d3eo8e2, d3eo8f2
        automated match to d3eo8f_
        complexed with act, cl, fmn, gol
      4. 2528897Domain d3eo8d1: 3eo8 D:1-218 [199352]
        Other proteins in same PDB: d3eo8a2, d3eo8b2, d3eo8c2, d3eo8d2, d3eo8e2, d3eo8f2
        automated match to d3eo8f_
        complexed with act, cl, fmn, gol
      5. 2528898Domain d3eo8e1: 3eo8 E:1-218 [199353]
        Other proteins in same PDB: d3eo8a2, d3eo8b2, d3eo8c2, d3eo8d2, d3eo8e2, d3eo8f2
        automated match to d3eo8f_
        complexed with act, cl, fmn, gol
      6. 2528899Domain d3eo8f1: 3eo8 F:1-218 [196093]
        Other proteins in same PDB: d3eo8a2, d3eo8b2, d3eo8c2, d3eo8d2, d3eo8e2, d3eo8f2
        automated match to d2hayc_
        complexed with act, cl, fmn, gol
    2. Domain for 3h4o:
    3. Domains for 3koq:
      1. 2528890Domain d3koqa1: 3koq A:1-172 [212479]
        Other proteins in same PDB: d3koqa2
        automated match to d2b67a1
        complexed with cl, fmn, gol
      2. 2528891Domain d3koqb_: 3koq B: [212480]
        Other proteins in same PDB: d3koqa2
        automated match to d2b67a1
        complexed with cl, fmn, gol
      3. 2528892Domain d3koqc_: 3koq C: [212481]
        Other proteins in same PDB: d3koqa2
        automated match to d2b67a1
        complexed with cl, fmn, gol
      4. 2528893Domain d3koqd_: 3koq D: [212482]
        Other proteins in same PDB: d3koqa2
        automated match to d2b67a1
        complexed with cl, fmn, gol
  9. 2528900Clostridium novyi [TaxId:386415] [225610] (1 PDB entry)
  10. 2528903Desulfitobacterium hafniense [TaxId:272564] [233297] (1 PDB entry)
  11. 2528908Exiguobacterium sibiricum [TaxId:262543] [188806] (1 PDB entry)
  12. 2528911Geobacter metallireducens [TaxId:269799] [226309] (1 PDB entry)
  13. 2528914Geobacter sulfurreducens [TaxId:243231] [226431] (1 PDB entry)
  14. 2528917Helicobacter pylori [TaxId:210] [187778] (2 PDB entries)
    1. Domain for 2h0u:
    2. Domains for 3qdl:
      1. 2528919Domain d3qdla_: 3qdl A: [215186]
        automated match to d3ge6a_
        complexed with fmn, gol
      2. 2528920Domain d3qdlb_: 3qdl B: [215187]
        automated match to d3ge6a_
        complexed with fmn, gol
      3. 2528921Domain d3qdlc_: 3qdl C: [215188]
        automated match to d3ge6a_
        complexed with fmn, gol
      4. 2528922Domain d3qdld_: 3qdl D: [215189]
        automated match to d3ge6a_
        complexed with fmn, gol
  15. 2528923Idiomarina loihiensis [TaxId:135577] [189444] (1 PDB entry)
  16. 2528927Lactobacillus plantarum [TaxId:1590] [269281] (2 PDB entries)
    1. Domains for 4qlx:
      1. 2528928Domain d4qlxa_: 4qlx A: [269288]
        automated match to d3gbha_
        complexed with cl, fmn, ktc
      2. 2528929Domain d4qlxb_: 4qlx B: [269287]
        automated match to d3gbha_
        complexed with cl, fmn, ktc
    2. Domains for 4qly:
      1. 2528930Domain d4qlya_: 4qly A: [269284]
        automated match to d3gbha_
        complexed with fmn
      2. 2528931Domain d4qlyb_: 4qly B: [269283]
        automated match to d3gbha_
        complexed with fmn
      3. 2528932Domain d4qlyc_: 4qly C: [269286]
        automated match to d3gbha_
        complexed with fmn
      4. 2528933Domain d4qlyd_: 4qly D: [269282]
        automated match to d3gbha_
        complexed with fmn
  17. 2528934Lactococcus lactis [TaxId:1358] [189386] (6 PDB entries)
    1. Domain for 2wqf:
    2. Domain for 4bn6:
    3. Domain for 4bn7:
    4. Domain for 4bn8:
    5. Domain for 4bn9:
    6. Domain for 4bnb:
  18. 2528941Mycobacterium smegmatis [TaxId:246196] [311252] (2 PDB entries)
    1. Domains for 2wzv:
      1. 2528944Domain d2wzva_: 2wzv A: [304617]
        automated match to d3gr3a_
        complexed with fmn, gol, po4
      2. 2528945Domain d2wzvb_: 2wzv B: [304618]
        automated match to d3gr3a_
        complexed with fmn, gol, po4
    2. Domains for 2wzw:
      1. 2528942Domain d2wzwa_: 2wzw A: [304619]
        automated match to d3gr3a_
        complexed with fmn, ndp, po4
      2. 2528943Domain d2wzwb_: 2wzw B: [304620]
        automated match to d3gr3a_
        complexed with fmn, ndp, po4
  19. 2528946Parabacteroides distasonis [TaxId:435591] [232883] (1 PDB entry)
  20. 2528949Peptoclostridium difficile [TaxId:645463] [322996] (1 PDB entry)
  21. 2528952Porphyromonas gingivalis [TaxId:242619] [232279] (1 PDB entry)
  22. 2528955Staphylococcus epidermidis [TaxId:176280] [188805] (1 PDB entry)
  23. 2528960Streptococcus mutans [TaxId:1309] [188802] (1 PDB entry)
  24. 2528965Streptococcus pyogenes [TaxId:301447] [187797] (1 PDB entry)
  25. 2528970Vibrio parahaemolyticus [TaxId:223926] [330502] (1 PDB entry)

More info for Protein automated matches from d.90.1.0: automated matches

Timeline for Protein automated matches from d.90.1.0: automated matches: